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Report for Sequence Feature Glyma.02g000200

Feature Type:gene_model
Chromosome:Gm02
Start:19463
stop:22147
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g000200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G36730.1AT Translation initiation factor IF2/IF5 JGI N/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation JGI N/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity JGI N/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG2767 KOG Translation initiation factor 5 (eIF-5) JGI N/AIEA
PTHR23001Panther EUKARYOTIC TRANSLATION INITIATION FACTOR JGI N/AIEA
PTHR23001:SF1Panther JGI N/AIEA
PF01873PFAM Domain found in IF2B/IF5 JGI N/AIEA
PF02020PFAM eIF4-gamma/eIF5/eIF2-epsilon JGI N/AIEA

Expression Patterns of Glyma.02g000200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g000200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g00220 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g000200
>Glyma.02g000200.2 sequence-type=transcript locus=Glyma.02g000200 ID=Glyma.02g000200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGCAACAATCTTAATTTAGGCTTTATTATAGTATTATAAATATTGGAGCGAACAGAAAAGAGGACACAGCGCAGAGCCGCCTCAACATCTGAAACAGACTCTATCCCTAATCCCTATCTTCTTCTCTGCTCTCTCCGCACGCTTTGGCTCCTCTGATCTCAGGTGTTGTTGGCTTGGTATCCGTGCAAGTTCTGCTGTAGCCGATTTGAAGGTGAAGGTGTCACCTTAAAGTTTCTTTCATGTTTGATCAGGCTACTATCCATTTGGGAGCAACTGAGCTGCTTGGAGAGTATTTTTCTTCTTCTAGAAAAAATTACAGACCCTCATCCCAGAGAGTTAGCTGTATGCATTGCGAGACATATCAGAAATTCATTCAGTTTTCTGGTTGCGGTTGGCCACCTTCCATTATACTTGAGGGAGATTCTTCAAGGGCACAAGCTACCTTAGAGGCTGAAATTGCGGCTGCGTATAATTTGAATTCTGGCATTTGCTGCATCTGAATATCTCTGAAACTTTGTAAGTCAACATGGCTTTACAGAACATTGGTGCTGCAAACAGTGATGATGCCTTCTACAGGTATAAGATGCCTAGGATGATTACCAAAATTGAGGGCAGAGGTAACGGCATCAAAACTAATGTTGTCAATATGGTTGATATTGCCAAGGCATTGGCAAGGCCTGCGTCTTACACGACCAAGTATTTTGGTTGTGAACTTGGGGCCCAGTCAAAATTTGATGAGAAGACCGGCACTTCTCACGTCAATGGAGCACATGATACTGTTAAGCTTGCTGGCCTTCTTGAGAACTTCATTAAGAAATATGTTCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATCACTAAGAACCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACTACCTTCATCATTAAGAACCCTCCAGAGGTTAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAGAAAGTGAAGAAAGAGGTTAAGAAGAAAGGCTCTTCATCTTCAAAAGATGGCACTGCTAAATCCACCTCTTCAAAGAAGAAAGCAAGTGGCTCTGATGAAGACCGCACTTCACCTACTCACAGTCAAATTGATGAGAAAGAGGAGGCTCCAgatgaagatgatggtgatgatgaCGTGCAATGGCTGACAGATACATCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAGAAAAAAGCAGCAAGTAACGGAAATGGCGGTTCTCAGAATGGTAACTCAATGCACTATGGGACCCTGGTTGGGGAAGTGAAAGCTAATTTGAAGAAAGGTATTGGAGCGAATGAATTGCTGTCCCATCTTTCAGCACATCCTGCACCTGCTCAAGAAAAGATGAGTGCTCTGGTTGAAGCTCTATTCGAGGGAACTGAGAAAGGTTTTGCTAAAGAAGCTGATAAGAAGAAGAACTACTTTGCTGCTGCTGTTGCCGAAGAGGGATCCCAGCTGTTATTGCTTCATGCTATTGAAGAATTTTCTTGCAAGTCTACTTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTAAAGGCACTCTATGATGCTGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGACTGAAGGGCGATAACAAGAACTCTAAGATTTTGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAGTGCAGAATCAGAAACCGAGGAAGAATAATTTTTCCTACATTCTCCGTTACTTATGTTTACTTGATTGTGTCATGTTCTTTATTTCCAATAAAGGTTATTGTAGGCCCCATGTGTTGTTGAACTACTATACTGTGCGAATGGTGCATGCTTGCTGGACCAGTATGTATGCCTCAGTGCGTTTTGTGATGTGCGGTTCTAATGTAATTTTGTTTTTGGTTGTTGATGATTATGTTATATGTTGTCTTGATAATATAATAGTAGTACTGCTTTTCTGTTGTGTCTAATCATGATTGTTTAATCATGTGGTTGATATGAACATCCTCTAGCTGCGTC
Coding sequences of Glyma.02g000200
>Glyma.02g000200.1 sequence-type=CDS polypeptide=Glyma.02g000200.1.p locus=Glyma.02g000200 ID=Glyma.02g000200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTACAGAACATTGGTGCTGCAAACAGTGATGATGCCTTCTACAGGTATAAGATGCCTAGGATGATTACCAAAATTGAGGGCAGAGGTAACGGCATCAAAACTAATGTTGTCAATATGGTTGATATTGCCAAGGCATTGGCAAGGCCTGCGTCTTACACGACCAAGTATTTTGGTTGTGAACTTGGGGCCCAGTCAAAATTTGATGAGAAGACCGGCACTTCTCACGTCAATGGAGCACATGATACTGTTAAGCTTGCTGGCCTTCTTGAGAACTTCATTAAGAAATATGTTCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATCACTAAGAACCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACTACCTTCATCATTAAGAACCCTCCAGAGGTTAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAGAAAGTGAAGAAAGAGGTTAAGAAGAAAGGCTCTTCATCTTCAAAAGATGGCACTGCTAAATCCACCTCTTCAAAGAAGAAAGCAAGTGGCTCTGATGAAGACCGCACTTCACCTACTCACAGTCAAATTGATGAGAAAGAGGAGGCTCCAGATGAAGATGATGGTGATGATGACGTGCAATGGCTGACAGATACATCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAGAAAAAAGCAGCAAGTAACGGAAATGGCGGTTCTCAGAATGGTAACTCAATGCACTATGGGACCCTGGTTGGGGAAGTGAAAGCTAATTTGAAGAAAGGTATTGGAGCGAATGAATTGCTGTCCCATCTTTCAGCACATCCTGCACCTGCTCAAGAAAAGATGAGTGCTCTGGTTGAAGCTCTATTCGAGGGAACTGAGAAAGGTTTTGCTAAAGAAGCTGATAAGAAGAAGAACTACTTTGCTGCTGCTGTTGCCGAAGAGGGATCCCAGCTGTTATTGCTTCATGCTATTGAAGAATTTTCTTGCAAGTCTACTTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTAAAGGCACTCTATGATGCTGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGACTGAAGGGCGATAACAAGAACTCTAAGATTTTGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAGTGCAGAATCAGAAACCGAGGAAGAATAA

>Glyma.02g000200.2 sequence-type=CDS polypeptide=Glyma.02g000200.2.p locus=Glyma.02g000200 ID=Glyma.02g000200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTACAGAACATTGGTGCTGCAAACAGTGATGATGCCTTCTACAGGTATAAGATGCCTAGGATGATTACCAAAATTGAGGGCAGAGGTAACGGCATCAAAACTAATGTTGTCAATATGGTTGATATTGCCAAGGCATTGGCAAGGCCTGCGTCTTACACGACCAAGTATTTTGGTTGTGAACTTGGGGCCCAGTCAAAATTTGATGAGAAGACCGGCACTTCTCACGTCAATGGAGCACATGATACTGTTAAGCTTGCTGGCCTTCTTGAGAACTTCATTAAGAAATATGTTCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATCACTAAGAACCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACTACCTTCATCATTAAGAACCCTCCAGAGGTTAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAGAAAGTGAAGAAAGAGGTTAAGAAGAAAGGCTCTTCATCTTCAAAAGATGGCACTGCTAAATCCACCTCTTCAAAGAAGAAAGCAAGTGGCTCTGATGAAGACCGCACTTCACCTACTCACAGTCAAATTGATGAGAAAGAGGAGGCTCCAGATGAAGATGATGGTGATGATGACGTGCAATGGCTGACAGATACATCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAGAAAAAAGCAGCAAGTAACGGAAATGGCGGTTCTCAGAATGGTAACTCAATGCACTATGGGACCCTGGTTGGGGAAGTGAAAGCTAATTTGAAGAAAGGTATTGGAGCGAATGAATTGCTGTCCCATCTTTCAGCACATCCTGCACCTGCTCAAGAAAAGATGAGTGCTCTGGTTGAAGCTCTATTCGAGGGAACTGAGAAAGGTTTTGCTAAAGAAGCTGATAAGAAGAAGAACTACTTTGCTGCTGCTGTTGCCGAAGAGGGATCCCAGCTGTTATTGCTTCATGCTATTGAAGAATTTTCTTGCAAGTCTACTTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTAAAGGCACTCTATGATGCTGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGACTGAAGGGCGATAACAAGAACTCTAAGATTTTGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAGTGCAGAATCAGAAACCGAGGAAGAATAA
Predicted protein sequences of Glyma.02g000200
>Glyma.02g000200.1.p sequence-type=predicted peptide transcript=Glyma.02g000200.1 locus=Glyma.02g000200 ID=Glyma.02g000200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTVKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGEMADEEQKKVKKEVKKKGSSSSKDGTAKSTSSKKKASGSDEDRTSPTHSQIDEKEEAPDEDDGDDDVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKKAASNGNGGSQNGNSMHYGTLVGEVKANLKKGIGANELLSHLSAHPAPAQEKMSALVEALFEGTEKGFAKEADKKKNYFAAAVAEEGSQLLLLHAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSKILKNAQPFIDWLQSAESETEEE*

>Glyma.02g000200.2.p sequence-type=predicted peptide transcript=Glyma.02g000200.2 locus=Glyma.02g000200 ID=Glyma.02g000200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTVKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGEMADEEQKKVKKEVKKKGSSSSKDGTAKSTSSKKKASGSDEDRTSPTHSQIDEKEEAPDEDDGDDDVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKKAASNGNGGSQNGNSMHYGTLVGEVKANLKKGIGANELLSHLSAHPAPAQEKMSALVEALFEGTEKGFAKEADKKKNYFAAAVAEEGSQLLLLHAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSKILKNAQPFIDWLQSAESETEEE*






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