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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12110.1 | AT | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | JGI | N/A | IEA |
| GO:0006412 | GO-bp | translation | EnsemblGenomes | N/A | IEA |
| GO:0006414 | GO-bp | translational elongation | EnsemblGenomes | N/A | IEA |
| GO:0006414 | GO-bp | translational elongation | JGI | N/A | IEA |
| GO:0005853 | GO-cc | eukaryotic translation elongation factor 1 complex | EnsemblGenomes | N/A | IEA |
| GO:0005853 | GO-cc | eukaryotic translation elongation factor 1 complex | JGI | N/A | IEA |
| GO:0003746 | GO-mf | translation elongation factor activity | EnsemblGenomes | N/A | IEA |
| GO:0003746 | GO-mf | translation elongation factor activity | JGI | N/A | IEA |
| KOG1668 | KOG | Elongation factor 1 beta/delta chain | JGI | N/A | IEA |
| PTHR11595 | Panther | ELONGATION FACTOR 1-BETA | JGI | N/A | IEA |
| PTHR11595:SF5 | Panther | JGI | N/A | IEA | |
| PF00736 | PFAM | EF-1 guanine nucleotide exchange domain | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ELF1B | elongation factor 1-beta | |
| ELF1B | Elongation Factor 1B |
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Glyma.02G276600 not represented in the dataset |
Glyma.02G276600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g039100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g276600 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma02g44460 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g276600.1 sequence-type=CDS polypeptide=Glyma.02g276600.1.p locus=Glyma.02g276600 ID=Glyma.02g276600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGTCACCTTCTCAGATCTACACACCGAAGAGGGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAAGCCAGGGGACACTTTTCCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCCGTGGACACCCTTGTTGAGGAACGCTTGACAGTTGAGCCATGCAACGAGTATATCCAGAGCTGTGACATTGTTGCATTCAACAAAATTTAA
>Glyma.02g276600.1.p sequence-type=predicted peptide transcript=Glyma.02g276600.1 locus=Glyma.02g276600 ID=Glyma.02g276600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAVTFSDLHTEEGIKSLDQFLSGKTYISGDQLTKDDIKVYAAVVEKPGDTFPNAAKWYDAVSSQLAPSFPGHAQGVRFSGAAAPAEAAPAKAAATAEEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLVEERLTVEPCNEYIQSCDIVAFNKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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