Glyma.02G275000

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Report for Sequence Feature Glyma.02G275000

Feature Type:	gene_model
Chromosome:	Gm02
Start:	45807348
stop:	45809399
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02G275000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60335.1	AT	Thioesterase superfamily protein	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
PTHR13078	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR13078:SF14	Panther	THIOESTERASE-LIKE PROTEIN	JGI	N/A	IEA
PF01575	PFAM	MaoC like domain	JGI	N/A	IEA
LYSINE-DEG2-PWY	SoyCyc9	lysine degradation II	Plant Metabolic Network		ISS
PWY-5080	SoyCyc9	very long chain fatty acid biosynthesis I	Plant Metabolic Network		ISS
PWY-5138	SoyCyc9	unsaturated, even numbered fatty acid β-oxidation	Plant Metabolic Network		ISS
PWY-7036	SoyCyc9	very long chain fatty acid biosynthesis II	Plant Metabolic Network		ISS
PWY-7601	SoyCyc9	arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)	Plant Metabolic Network		ISS
GN7V-66320	SoyCyc9-rxn	enoyl-CoA hydratase 2	Plant Metabolic Network		ISS

Expression Patterns of Glyma.02G275000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02G275000 not represented in the dataset	Glyma.02G275000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02G275000

Paralog	Evidence	Comments
Glyma.14g041000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02G275000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g275000	Wm82.a4.v1	ISS	As supplied by JGI
Glyma02g44270	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02G275000

Limit To All Plant Sequences

>Glyma.02g275000.2 sequence-type=transcript locus=Glyma.02g275000 ID=Glyma.02g275000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTACTACGTATTAAATAATAAGCATACTGTCTCCCAAGCTGCTCAAACGCCCACCGGCTGTTCGACTTTAGTCCATGCCACCAGTTACCTCAAGAAACCACATCTACCAGCCGTGAGAATATTTAAGTTGCACTTTACTTGATTTACAGTTAGTGGGGTATTACATCAGGGCTTTGTTTTGTTGATTTGAACCCTTGCAGCTTGCAAGAATGCTCATAAGAATTTTACATTGTCACAAAGTCCATCCTCTGAGCCCTAGGTGCTTTACTTCTGCAACTCTTAATGTACTTATGTCTGGGGATGTATTGAGAAAAACAAGGGTTTATACTGAGGAAGATGTTCTCCAGTACTCCAAGGTGAGTTGTGATTCTAATCCTTTGCACACTGATTCTGCTGCTGCCAAAGATGTTGGATTTGAAGGTCCACTGGTACATGGGATGCTTGTGGCTTCTCTCTTTCCTCATATCATCTCATCACATTTTCCAGGAGCTGTGTATGTATCTCAAAGCTTGAATTTTAAGTTCCCAGTGTATATTGGAGATCAAATTATTGGTGAAGTGCAAGCAACTAATCTGAGAGAAAATAAAAATCGATATTTTGCAAAGTTTAAGACAAGGTGCTTCAAGAATGGTGACCTTCTTGTCATTGATGGTGAGGCTGTGGCTTTGTTACCAACCTTGACTGTAGAACAGATTCAACACGAGAAGCGGTAAAAGATATTCATTGTTCTTGACTGTTAATCGCAAATACCTTTTCAAAGGCAATGTTGGGCATAAAAGTAATATGTTTGTTGTTTTGTGTTTTAATGAATAGTGATTGGGGGTTCTAAATTGTGATCCCCTCCCCTGAACACAAAGACAGACAGTTGACACCAAAAAGTTTTTGTTCTCTTTGTTATTCTGATGTTGTTGCTGAACAGTTATGCTTGATCTTTTTTGTGTGCCTTTTGATCATATTACGCAAAGGGTCACTTGATGCACTGAGCTCCGAATCAAGGGATATCTTATTGATAATTTTTTTGGCCTTTCCTGCCATCTAATACTATTGGTTTTGGAGGAAATGTTTAATGTATTAATAAGTTAGATTTACTTTGTTTCGTGCCGATACGGTTTCTCTATATTTTGTATTGGCAACTGCCTCGCATGAAACCCAAAAATATGGTCCCTTATTGATCCTG

>Glyma.02g275000.3 sequence-type=transcript locus=Glyma.02g275000 ID=Glyma.02g275000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACTAGGTACTACGTATTAAATAATAAGCATACTGTCTCCCAAGCTGCTCAAACGCCCACCGGCTGTTCGACTTTAGTCCATGCCACCAGTTACCTCAAGAAACCACATCTACCAGCCCTTGCAAGAATGCTCATAAGAATTTTACATTGTCACAAAGTCCATCCTCTGAGCCCTAGGTGCTTTACTTCTGCAACTCTTAATGTACTTATGTCTGGGGATGTATTGAGAAAAACAAGGGTTTATACTGAGGAAGATGTTCTCCAGTACTCCAAGGTGAGTTGTGATTCTAATCCTTTGCACACTGATTCTGCTGCTGCCAAAGATGTTGGATTTGAAGGTCCACTGGTACATGGGATGCTTGTGGCTTCTCTCTTTCCTCATATCATCTCATCACATTTTCCAGGAGCTGTGTATGTATCTCAAAGCTTGAATTTTAAGTTCCCAGTGTATATTGGAGATCAAATTATTGGTGAAGTGCAAGCAACTAATCTGAGAGAAAATAAAAATCGATATTTTGCAAAGTTTAAGACAAGGTGCTTCAAGAATGGTGACCTTCTTGTCATTGATGGTGAGGCTGTGGCTTTGTTACCAACCTTGACTGTAGAACAGATTCAACACGAGAAGCGGTAAAAGATATTCATTGTTCTTGACTGTTAATCGCAAATACCTTTTCAAAGGCAATGTTGGGCATAAAAGTAATATGTTTGTTGTTTTGTGTTTTAATGAATAGTGATTGGGGGTTCTAAATTGTGATCCCCTCCCCTGAACACAAAGACAGACAGTTGACACCAAAAAGTTTTTGTTCTCTTTGTTATTCTGATGTTGTTGCTGAACAGTTATGCTTGATCTTTTTTGTGTGCCTTTTGATCATATTACGCAAAGGGTCACTTGATGCACTGAGCTCCGAATCAAGGGATATCTTATTGATAATTTTTTTGGCCTTTCCTGCCATCTAATACTATTGGTTTTGGAGGAAATGTTTAATGTATTAATAAGTTAGATTTACTTTGTTTCGTGCCGATACGGTTTCTCTATATTTTGTATTGGCAACTGCCTCGCATGAAAC

>Glyma.02g275000.4 sequence-type=transcript locus=Glyma.02g275000 ID=Glyma.02g275000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTACTACGTATTAAATAATAAGCATACTGTCTCCCAAGCTGCTCAAACGCCCACCGGCTGTTCGACTTTAGTCCATGCCACCAGTTACCTCAAGAAACCACATCTACCAGCCCTTGCAAGAATGCTCATAAGAATTTTACATTGTCACAAAGTCCATCCTCTGAGCCCTAGGTGCTTTACTTCTGCAACTCTTAATGTACTTATGTCTGGGGATGTATTGAGAAAAACAAGGGTTTATACTGAGGAAGATGTTCTCCAGTACTCCAAGGTGAGTTGTGATTCTAATCCTTTGCACACTGATTCTGCTGCTGCCAAAGATGTTGGATTTGAAGGTCCACTGGTACATGGGATGCTTGTGGCTTCTCTCTTTCCTCATATCATCTCATCACATTTTCCAGGAGCTGTGTATGTATCTCAAAGCTTGAATTTTAAGTTCCCAGTGTATATTGGAGATCAAATTATTGGTGAAGTGCAAGCAACTAATCTGAGAGAAAATAAAAATCGATATTTTGCAAAGTTTAAGACAAGGTGCTTCAAGAATGGTGACCTTCTTGTCATTGATGGTGAGGCTGTGGCTTTGTTACCAACCTTGACTGTAGAACAGATTCAACACGAGAAGCGTGATTGGGGGTTCTAAATTGTGATCCCCTCCCCTGAACACAAAGACAGACAGTTGACACCAAAAAGTTTTTGTTCTCTTTGTTATTCTGATGTTGTTGCTGAACAGTTATGCTTGATCTTTTTTGTGTGCCTTTTGATCATATTACGCAAAGGGTCACTTGATGCACTGAGCTCCGAATCAAGGGATATCTTATTGATAATTTTTTTGGCCTTTCCTGCCATCTAATACTATTGGTTTTGGAGGAAATGTTTAATGTATTAATAAGTTAGATTTACTTTGTTTCGTGCCGATACGGTTTCTCTATATTTTGTATTGGCAACTGCCTCGCATGAAAC

Coding sequences of Glyma.02G275000

Limit To All Plant Sequences

>Glyma.02g275000.1 sequence-type=CDS polypeptide=Glyma.02g275000.1.p locus=Glyma.02g275000 ID=Glyma.02g275000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCATAAGAATTTTACATTGTCACAAAGTCCATCCTCTGAGCCCTAGGTGCTTTACTTCTGCAACTCTTAATGTACTTATGTCTGGGGATGTATTGAGAAAAACAAGGGTTTATACTGAGGAAGATGTTCTCCAGTACTCCAAGGTGAGTTGTGATTCTAATCCTTTGCACACTGATTCTGCTGCTGCCAAAGATGTTGGATTTGAAGGTCCACTGGTACATGGGATGCTTGTGGCTTCTCTCTTTCCTCATATCATCTCATCACATTTTCCAGGAGCTGTGTATGTATCTCAAAGCTTGAATTTTAAGTTCCCAGTGTATATTGGAGATCAAATTATTGGTGAAGTGCAAGCAACTAATCTGAGAGAAAATAAAAATCGATATTTTGCAAAGTTTAAGACAAGGTGCTTCAAGAATGGTGACCTTCTTGTCATTGATGGTGAGGCTGTGGCTTTGTTACCAACCTTGACTGTAGAACAGATTCAACACGAGAAGCGTGATTGGGGGTTCTAA

>Glyma.02g275000.2 sequence-type=CDS polypeptide=Glyma.02g275000.2.p locus=Glyma.02g275000 ID=Glyma.02g275000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCATAAGAATTTTACATTGTCACAAAGTCCATCCTCTGAGCCCTAGGTGCTTTACTTCTGCAACTCTTAATGTACTTATGTCTGGGGATGTATTGAGAAAAACAAGGGTTTATACTGAGGAAGATGTTCTCCAGTACTCCAAGGTGAGTTGTGATTCTAATCCTTTGCACACTGATTCTGCTGCTGCCAAAGATGTTGGATTTGAAGGTCCACTGGTACATGGGATGCTTGTGGCTTCTCTCTTTCCTCATATCATCTCATCACATTTTCCAGGAGCTGTGTATGTATCTCAAAGCTTGAATTTTAAGTTCCCAGTGTATATTGGAGATCAAATTATTGGTGAAGTGCAAGCAACTAATCTGAGAGAAAATAAAAATCGATATTTTGCAAAGTTTAAGACAAGGTGCTTCAAGAATGGTGACCTTCTTGTCATTGATGGTGAGGCTGTGGCTTTGTTACCAACCTTGACTGTAGAACAGATTCAACACGAGAAGCGGTAA

>Glyma.02g275000.3 sequence-type=CDS polypeptide=Glyma.02g275000.3.p locus=Glyma.02g275000 ID=Glyma.02g275000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCATAAGAATTTTACATTGTCACAAAGTCCATCCTCTGAGCCCTAGGTGCTTTACTTCTGCAACTCTTAATGTACTTATGTCTGGGGATGTATTGAGAAAAACAAGGGTTTATACTGAGGAAGATGTTCTCCAGTACTCCAAGGTGAGTTGTGATTCTAATCCTTTGCACACTGATTCTGCTGCTGCCAAAGATGTTGGATTTGAAGGTCCACTGGTACATGGGATGCTTGTGGCTTCTCTCTTTCCTCATATCATCTCATCACATTTTCCAGGAGCTGTGTATGTATCTCAAAGCTTGAATTTTAAGTTCCCAGTGTATATTGGAGATCAAATTATTGGTGAAGTGCAAGCAACTAATCTGAGAGAAAATAAAAATCGATATTTTGCAAAGTTTAAGACAAGGTGCTTCAAGAATGGTGACCTTCTTGTCATTGATGGTGAGGCTGTGGCTTTGTTACCAACCTTGACTGTAGAACAGATTCAACACGAGAAGCGGTAA

>Glyma.02g275000.4 sequence-type=CDS polypeptide=Glyma.02g275000.4.p locus=Glyma.02g275000 ID=Glyma.02g275000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCATAAGAATTTTACATTGTCACAAAGTCCATCCTCTGAGCCCTAGGTGCTTTACTTCTGCAACTCTTAATGTACTTATGTCTGGGGATGTATTGAGAAAAACAAGGGTTTATACTGAGGAAGATGTTCTCCAGTACTCCAAGGTGAGTTGTGATTCTAATCCTTTGCACACTGATTCTGCTGCTGCCAAAGATGTTGGATTTGAAGGTCCACTGGTACATGGGATGCTTGTGGCTTCTCTCTTTCCTCATATCATCTCATCACATTTTCCAGGAGCTGTGTATGTATCTCAAAGCTTGAATTTTAAGTTCCCAGTGTATATTGGAGATCAAATTATTGGTGAAGTGCAAGCAACTAATCTGAGAGAAAATAAAAATCGATATTTTGCAAAGTTTAAGACAAGGTGCTTCAAGAATGGTGACCTTCTTGTCATTGATGGTGAGGCTGTGGCTTTGTTACCAACCTTGACTGTAGAACAGATTCAACACGAGAAGCGTGATTGGGGGTTCTAA

Predicted protein sequences of Glyma.02G275000

Limit To All Plant Sequences

>Glyma.02g275000.1.p sequence-type=predicted peptide transcript=Glyma.02g275000.1 locus=Glyma.02g275000 ID=Glyma.02g275000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLIRILHCHKVHPLSPRCFTSATLNVLMSGDVLRKTRVYTEEDVLQYSKVSCDSNPLHTDSAAAKDVGFEGPLVHGMLVASLFPHIISSHFPGAVYVSQSLNFKFPVYIGDQIIGEVQATNLRENKNRYFAKFKTRCFKNGDLLVIDGEAVALLPTLTVEQIQHEKRDWGF*

>Glyma.02g275000.2.p sequence-type=predicted peptide transcript=Glyma.02g275000.2 locus=Glyma.02g275000 ID=Glyma.02g275000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLIRILHCHKVHPLSPRCFTSATLNVLMSGDVLRKTRVYTEEDVLQYSKVSCDSNPLHTDSAAAKDVGFEGPLVHGMLVASLFPHIISSHFPGAVYVSQSLNFKFPVYIGDQIIGEVQATNLRENKNRYFAKFKTRCFKNGDLLVIDGEAVALLPTLTVEQIQHEKR*

>Glyma.02g275000.3.p sequence-type=predicted peptide transcript=Glyma.02g275000.3 locus=Glyma.02g275000 ID=Glyma.02g275000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLIRILHCHKVHPLSPRCFTSATLNVLMSGDVLRKTRVYTEEDVLQYSKVSCDSNPLHTDSAAAKDVGFEGPLVHGMLVASLFPHIISSHFPGAVYVSQSLNFKFPVYIGDQIIGEVQATNLRENKNRYFAKFKTRCFKNGDLLVIDGEAVALLPTLTVEQIQHEKR*

>Glyma.02g275000.4.p sequence-type=predicted peptide transcript=Glyma.02g275000.4 locus=Glyma.02g275000 ID=Glyma.02g275000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLIRILHCHKVHPLSPRCFTSATLNVLMSGDVLRKTRVYTEEDVLQYSKVSCDSNPLHTDSAAAKDVGFEGPLVHGMLVASLFPHIISSHFPGAVYVSQSLNFKFPVYIGDQIIGEVQATNLRENKNRYFAKFKTRCFKNGDLLVIDGEAVALLPTLTVEQIQHEKRDWGF*

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