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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20990.1 | AT | molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) | JGI | N/A | IEA |
| GO:0006777 | GO-bp | Mo-molybdopterin cofactor biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006777 | GO-bp | Mo-molybdopterin cofactor biosynthetic process | JGI | N/A | IEA |
| GO:0009734 | GO-bp | auxin-activated signaling pathway | EnsemblGenomes | N/A | IEA |
| GO:0010038 | GO-bp | response to metal ion | EnsemblGenomes | N/A | IEA |
| GO:0018315 | GO-bp | molybdenum incorporation into molybdenum-molybdopterin complex | EnsemblGenomes | N/A | IEA |
| GO:0032324 | GO-bp | molybdopterin cofactor biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0032324 | GO-bp | molybdopterin cofactor biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0008940 | GO-mf | nitrate reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0030151 | GO-mf | molybdenum ion binding | EnsemblGenomes | N/A | IEA |
| GO:0061598 | GO-mf | molybdopterin adenylyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0061599 | GO-mf | molybdopterin molybdotransferase activity | EnsemblGenomes | N/A | IEA |
| KOG2371 | KOG | Molybdopterin biosynthesis protein | JGI | N/A | IEA |
| PTHR10192 | Panther | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN | JGI | N/A | IEA |
| PF00994 | PFAM | Probable molybdopterin binding domain | JGI | N/A | IEA |
| PF03453 | PFAM | MoeA N-terminal region (domain I and II) | JGI | N/A | IEA |
| PF03454 | PFAM | MoeA C-terminal region (domain IV) | JGI | N/A | IEA |
| PWY-6823 | SoyCyc9 | molybdenum cofactor biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-45253 | SoyCyc9-rxn | molybdopterin molybdotransferase | Plant Metabolic Network | ISS |
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Glyma.02G272700 not represented in the dataset |
Glyma.02G272700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g272700 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma02g44040 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g272700.1 sequence-type=CDS polypeptide=Glyma.02g272700.1.p locus=Glyma.02g272700 ID=Glyma.02g272700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATCTCCGTCATTGACGCTCTCCAAACGGTCCTTAACGCCTCTAAACGTCTTCCCCCACTCACTGTTCCCCTTCACGATGCCCTAGGCAAGGTCTTGGCCCAAGATGTTCGCGCCCCCGATCCTCTCCCTCCCTACCCGGCCTCCGTCAAGGACGGTTACGCCGTCGTCTCCGCCGATGGCCCCGGCGAGTATCCCGTCGTTGCCGAATCGAGAGCTGGAGATGACGCTCTCGGCCTCACTCTCTCCCCTGGAACTGTCGCTTACGTCACAACCGGAGGACCGATACCTGATGGTGCTGATGCAGTTGTTCAGGTTGAGAATACTGAAATAGTGAACAATGCCTCCGATGGTACTAAGAGGGTCAGAATATTGCTACAAACCACCAAAGGCAATGATATACGCCCAGTGGGAGTTGATATTAAGAAAGATGCAGTAGTCTTGACATCTGGAGAAAGGTTAGGTGCTTCAGAAATTGGTTTGCTTGCTACAGTTGGTGTTACAATGGTTAAGGTGTATCCTACTCCAACAGTTGCTGTTCTTTCTACTGGAGACGAGCTTGTGGAGCCAACTACTGGGCATCTGAATCGTGGTCAGATTAGGGACTCTAATCGTGCCATGCTGCTGGCAGCTGCGGTACAGCATCAGTGCAAAGTTCTGGACTTTGGTATTGCTAAGGATGACAAAGAATATCAAGGAAGGATCTTGGATAAAGCATTTGCGTCTGGAATTCATATTCTTCTAACTTCAGGAGGTGTTTCAATGGGAGACAAAGATTTTATCAAGCCTTTGCTTGAAAAGCGAGGAAAAGTACATTTCGATAAGGTGTGTATTAAACCAGGCAAGCCATTTACATTTGCAGAGATTGACTTTCAATCTACAGAGAGCAAAATTCTAGCTTTTGGGCTACCTGGAAATCCTGTCAGCTCTTTAGTTTGCTTCCATCTCTTTGTGGTCCCTGCAATACGCTACCTTGCAGGGTGGACAAATCCTCATCATTTTAGGGTACAAGCTCGGCTTCGTCAACCAATAAAGACAGATCCAATTAGGCCAGAATATCATCGTGCTTCTGTTATATGGACTGACAATGATGGATCAGGCAATCCAGGTTTTGTTGCTGTGAGCACTGGTCATCAGGTAAGCAGTCGACTACTTAGTATGAAGTCAGCTAATGCCTTGTTGGAGTTTCCAGCAACAGGCAGTGTAGTTTCTGCAGGGACTGCTGTGTCAGCTATCATAATTTCTGACCTAAGACCTATGGCATGTGATGAGAATCATAAGTCATCAGACTCAGCCTTTGCTTTGCCAGGAATTAAATCAAATAAAATAACTACTGATTCTTCAGGGGATGCTGAAGTCAAAGTGGCTATTCTTACAGTTAGTGATACAGTTGCTATGGGTGCTGGCCCAGATCGAAGTGGTCCCAGGGCAGTTTCTGTTATTAATTCTTCTTCAGAAAGACTAGGAGGAGCAAGAGTTGTAGCCACTGCTGTGGTTCCAGATGATGTGGCAAAAATTCAGGACATTCTAAGAAGATGGAGTGATATTGAACAAATGGATCTCATAATTACTCTTGGGGGGACTGGCTTTACCTCTCGAGATTTAACGCCAGAAGCTACAAAACCATTGATTGAGAAAGAAACACCTGGCCTTCTGCATGTAATGATGCAAGAGAGTTTAAAGGTGACCAAATCTGCAATGCTTTCACGCTCTGCAGCTGGAATCAGAGGATCAACCTTGATCATTAACATGCCTGGAAACCCTAATGCTGTTGCCGAGTGTATGGAAGCTTTATTGCCGGCACTTAAGCATGGTCTGAAACAGCTCAGGGGAGACAAGAAAGAAAAACATCCTCGTCACGTTCCTCATGCCGAAGCAGTTCCTGCAGATGTGTGGGAACAGAGTTATATGCTAGCCACTGGTGCTGGCTCTGATGTCTCTTGTTCCTGTTGCACGTAA
>Glyma.02g272700.1.p sequence-type=predicted peptide transcript=Glyma.02g272700.1 locus=Glyma.02g272700 ID=Glyma.02g272700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MISVIDALQTVLNASKRLPPLTVPLHDALGKVLAQDVRAPDPLPPYPASVKDGYAVVSADGPGEYPVVAESRAGDDALGLTLSPGTVAYVTTGGPIPDGADAVVQVENTEIVNNASDGTKRVRILLQTTKGNDIRPVGVDIKKDAVVLTSGERLGASEIGLLATVGVTMVKVYPTPTVAVLSTGDELVEPTTGHLNRGQIRDSNRAMLLAAAVQHQCKVLDFGIAKDDKEYQGRILDKAFASGIHILLTSGGVSMGDKDFIKPLLEKRGKVHFDKVCIKPGKPFTFAEIDFQSTESKILAFGLPGNPVSSLVCFHLFVVPAIRYLAGWTNPHHFRVQARLRQPIKTDPIRPEYHRASVIWTDNDGSGNPGFVAVSTGHQVSSRLLSMKSANALLEFPATGSVVSAGTAVSAIIISDLRPMACDENHKSSDSAFALPGIKSNKITTDSSGDAEVKVAILTVSDTVAMGAGPDRSGPRAVSVINSSSERLGGARVVATAVVPDDVAKIQDILRRWSDIEQMDLIITLGGTGFTSRDLTPEATKPLIEKETPGLLHVMMQESLKVTKSAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHGLKQLRGDKKEKHPRHVPHAEAVPADVWEQSYMLATGAGSDVSCSCCT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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