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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49630.1 | AT | presequence protease 2 | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG2019 | KOG | Metalloendoprotease HMP1 (insulinase superfamily) | JGI | N/A | IEA |
| PTHR11851 | Panther | METALLOPROTEASE | JGI | N/A | IEA |
| PTHR11851:SF68 | Panther | PRESEQUENCE PROTEASE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF00675 | PFAM | Insulinase (Peptidase family M16) | JGI | N/A | IEA |
| PF05193 | PFAM | Peptidase M16 inactive domain | JGI | N/A | IEA |
| PF08367 | PFAM | Peptidase M16C associated | JGI | N/A | IEA |
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Glyma.01g244900 not represented in the dataset |
Glyma.01g244900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g45650 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g244900.1 sequence-type=CDS polypeptide=Glyma.01g244900.1.p locus=Glyma.01g244900 ID=Glyma.01g244900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAAGGGCGGCACTGGTTCGTTGTCTGCCGTGCTCTTCTGTGTTGTGCAGAAGATATTTACACTCTCACTCACACTTGTGTCGTCCCTCTTCCTCTATTAGTATTATTCCCTCTCTCTCCCTTCCAACCATAAGGCCTCTCTGTCTGCCCCGCCGCCGCTCCTCCTCCTCCTCCAGATTGCTTCCCCTTTACTTCCGTACCACCATCAACAGGAAACACTTCTCTTCTCTCGCCCCGAGAGCTGTTCTCTCCCCTTCTCCTTCTTCAGGTTTTGCTGAGGTTAATGATGAAGTTGCCCTTAAATTGGGGTTTGAGAAAGTTTCCGAGGAATTCATTCCAGAATGCAAATCAAAAGCTGTTCTTTTCAGGCACATCAAGACCGGGGCTCAAGTCATGTCTGTTTCCAACGACGACGACAATAAAGTCTTTGGAATTGTTTTCCGCACTCCTCCGAAAGACTCCACTGGTATCCCTCACATTCTGGAGCATAGCGTATTATGCGGCTCACGAAAATACCCTCTCAAAGAGCCTTTTGTTGAATTGTTGAAAGGAAGCTTGCACACTTTCCTTAATGCGTTCACCTATCCCGATAGGACATGTTACCCAGTTGCTTCCACAAATGCCAAGGATTTCTATAATTTGGTTGATGTCTACCTGGATGCGGTTTTCTTTCCCAGATGTGTCGAGGACTTTCAGATTTTTCAACAGGAAGGCTGGCACTTTGAGCTCAACGATCCTTCCGAAGACATCACTTATAAAGGTGTCGTGTTCAATGAGATGAAGGGTGTCTACTCTCAACCGGATAATATACTTGGGCGAGCTGCTCAACAGGCTCTTTTCCCAGACACCACCTATGGTGTTGACAGTGGAGGTGATCCTCGAGTTATTCCCAAGTTGACTTTTGAGGAATTTAAGGAATTTCACCGCAAGTATTACCATCCTAGCAATTCCCGCATATGGTTTTATGGAGATGATGATCCAAATGAGCGCCTCCGCATCCTAAGTGAATATTTAGACTTGTTTGATTCTAGTTTGGCCTCTCATGAATCAAGGGTTGAACCACAGACACTATTTTCAAAGCCAGTCCGGATTGTTGAGACATATCCTGCTGGTGAAGGGGGTGATTTGAAGAAGAAGCACATGGTCTGTCTTAACTGGTTGCTCTCTGATAAGCCCTTAGACCTGGAAACTGAGCTAACACTAGGATTTTTGAATCACCTTCTGTTGGGCACCCCTGCTTCACCACTGAGGAAAATATTGCTAGAAAGTAGACTGGGCGATGCCATTGTTGGTGGTGGGGTTGAAGATGAACTACTCCAGCCTCAATTTAGCATTGGAATGAAGGGTGTTTCTGAAGATGATATTCATAAGGTAGAAGAGCTGGTCACAAGTACACTTAAAAAGTTGGCAGAGGAAGGTTTTGATACAGATGCCATTGAGGCTTCTATGAATACAATTGAATTTTCTCTGAGAGAGAACAACACTGGGTCATTTCCTCGTGGGTTGTCTCTCATGCTCCAGTCCATTGGTAAATGGATTTATGATATGAATCCCTTTGAGCCACTGAAGTATGAGAAGCCTCTTCAAGACCTAAAATCTAGAATAGCAAAGGAGGGCTCTAAATCTGTGTTTTCTCCTCTAATAGAGAAATTCATCTTGAACAACCCTCATCAAGTTACCGTGGAAATGCAGCCTGATCCTGAAAAAGCTGCTCGTGATGAAGTCGCAGAGAAACAGATATTGCAGAAAGTTAAAGCTAGTATGACAACAGAAGATCTAGCAGAGTTGGCCCGTGCTACTCATGAGCTTCGGCTTAAGCAGGAGACTCCTGACCCACCTGAAGCTTTGAAAACTGTTCCTAGCCTTTCTCTACAAGATATTCCTAAAGAACCTATTCGTGTTCCCACTGAGGTTGGGGATATCAATGGAGTAAAAGTTTTGCAGCATGATCTCTTCACCAATGATGTCCTTTACACTGAAATAGTATTCAACATGAAATCATTGAAGCAAGAGCTTCTTCCATTGGTGCCACTGTTTTGCCAATCATTGTTGGAGATGGGAACAAAGGACCTGACTTTTGTCCAATTAAACCAATTAATTGGAAGAAAAACTGGAGGAATATCAGTTTATCCATTCACATCATCAGTGCGGGGCAAGGAAGATCCATGTAGTCACATGGTTATTCGAGGCAAAGCCATGGCTGGACATATTGAAGACCTTTATGACTTGGTTAATTCTGTTCTTCAAGATGTCCAATTTACAGATCAACAGCGTTTCAAACAATTTGTTTCCCAGAGTAGAGCAAGAATGGAGAACCGGTTAAGAGGAAGTGGTCACGGAATTGCAGCTGCAAGGATGGATGCAAAACTAAATGCAGCAGGTTGGATGTCAGAAAAGATGGGAGGTCTCAGTTACCTTGAATTCCTCCGAACACTTGAAGAGAGAGTTGATCAAGATTGGGCCGATATCTCATCATCTCTTGAGGAGATCCGCAAATCTATATTTTCCAAGCAAGGCTGCTTGATAAATGTCACTGCTGATAGGAAAAACCTTGCAAAGACAGAAAAAGTTCTGAGCAAATTTGTTGATCTGCTTCCTACTAGCTCTCCCATTGCAACAACTACTTGGAATGTTAGACTTCCATTGACAAATGAAGCTATCGTGATTCCTACTCAGGTTAATTACATTGGAAAAGCAGCCAACATTTATGATACTGGTTATCGGCTTAATGGGAGTGCATATGTTATTTCCAAATACATTAGCAATACATGGTTGTGGGATCGTGTACGTGTTAGTGGTGGAGCTTATGGAGGTTTCTGTGATTTTGATACTCACTCGGGAGTGTTCTCCTTCTTATCTTATCGTGATCCCAATTTGCTGAAGACACTTGATGTATATGATGGAACTGGTGACTTCTTAAGAGAACTACAAATAGATGACGACACTTTAACAAAAGCCATAATTGGAACCATTGGGGATGTAGATGCGTATCAACTTCCTGATGCCAAAGGTTATAGTAGTATGTTGCGGTACTTACTGGGTATCACAGAGGAAGAAAGGCAAAGGAGACGTGAAGAGATATTATCTACTAGTTTGAAGGACTTCAAAATTTTTATGGATGCTATGGAAGCAGTTAAGGATAAAGGGGTTGTGGTTGCAGTGGCATCTCCAGAGGATGTAGATACGGCCAACAAGGACCGTCCCGACTTCTTTCAAGTGAAGAAAGCCCTTTAG
>Glyma.01g244900.1.p sequence-type=predicted peptide transcript=Glyma.01g244900.1 locus=Glyma.01g244900 ID=Glyma.01g244900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MERAALVRCLPCSSVLCRRYLHSHSHLCRPSSSISIIPSLSLPTIRPLCLPRRRSSSSSRLLPLYFRTTINRKHFSSLAPRAVLSPSPSSGFAEVNDEVALKLGFEKVSEEFIPECKSKAVLFRHIKTGAQVMSVSNDDDNKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNAKDFYNLVDVYLDAVFFPRCVEDFQIFQQEGWHFELNDPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDTTYGVDSGGDPRVIPKLTFEEFKEFHRKYYHPSNSRIWFYGDDDPNERLRILSEYLDLFDSSLASHESRVEPQTLFSKPVRIVETYPAGEGGDLKKKHMVCLNWLLSDKPLDLETELTLGFLNHLLLGTPASPLRKILLESRLGDAIVGGGVEDELLQPQFSIGMKGVSEDDIHKVEELVTSTLKKLAEEGFDTDAIEASMNTIEFSLRENNTGSFPRGLSLMLQSIGKWIYDMNPFEPLKYEKPLQDLKSRIAKEGSKSVFSPLIEKFILNNPHQVTVEMQPDPEKAARDEVAEKQILQKVKASMTTEDLAELARATHELRLKQETPDPPEALKTVPSLSLQDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEIVFNMKSLKQELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPFTSSVRGKEDPCSHMVIRGKAMAGHIEDLYDLVNSVLQDVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAKLNAAGWMSEKMGGLSYLEFLRTLEERVDQDWADISSSLEEIRKSIFSKQGCLINVTADRKNLAKTEKVLSKFVDLLPTSSPIATTTWNVRLPLTNEAIVIPTQVNYIGKAANIYDTGYRLNGSAYVISKYISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLDVYDGTGDFLRELQIDDDTLTKAIIGTIGDVDAYQLPDAKGYSSMLRYLLGITEEERQRRREEILSTSLKDFKIFMDAMEAVKDKGVVVAVASPEDVDTANKDRPDFFQVKKAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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