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Report for Sequence Feature Glyma.01g239700

Feature Type:gene_model
Chromosome:Gm01
Start:56369198
stop:56375265
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g239700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19280.1AT kinase associated protein phosphatase JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0004722GO-mf protein serine/threonine phosphatase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
KOG0698 KOG Serine/threonine protein phosphatase JGI N/AIEA
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI N/AIEA
PTHR13832:SF10Panther GM14286P JGI N/AIEA
PF00481PFAM Protein phosphatase 2C JGI N/AIEA
PF00498PFAM FHA domain JGI N/AIEA

Proteins Associated with Glyma.01g239700
LocusGene SymbolProtein Name
KAPP2 kinase-associated protein phosphatase 2

Expression Patterns of Glyma.01g239700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g239700
ParalogEvidenceComments
Glyma.11g004000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g239700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g45030 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g239700
>Glyma.01g239700.1 sequence-type=CDS polypeptide=Glyma.01g239700.1.p locus=Glyma.01g239700 ID=Glyma.01g239700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCCGATGCTACAAACCATTCTCACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCGTCATTTTTCTTTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCGCGTTTCCTCTCCTCCATCAAGGGCGAGCTAGAGCGGCCCCTTTTTGGGGACGTAGGTGATGCGTCGTCGTTTAATCGGAGTAATGAATTGCCTCGAGATCATGATCTCGAGGGTGCGTGTTATCCCAGTGAAGCTCATTTCCGCTCTCCTCGAACCCATGGCCAAGTCCTTGTTCACAAGCAAAGGCTTCAAACCCTTAACATGCCCCAGCCACAGGCTGCTGATACTTTGGTTGTCGATGTCATCTCTGATCATTCCTCCTCCGAGGATCTTGATGTTGGTCAAACCCTTAAGCTTCCCTCATCTCATTTAGCTCAAATTCAAAAGCATGCCCTTCCCAATTTTCAAATTGATAGACTTCAGGACTTTGTGCAAAGGGATATCTCTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGCCCTTCTCAGGGACTTCGTTATTCAGTACAGTCAACGAGCCCCTCTCGTCTTCCGCTGACCTTGGGAAGGGTTTCTCCGAGTGATTTGTTGATAAAGGATTCAGAAGTGTCGGGAAAGCATGCCATGATTAAGTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGATATGGGTAGCCTCAACGGAACACTGTTGAATTCTACGCCGATCAACCATCCAGACACTGGAAGTAGGAATTGGGGGGATCCAATGAATCTTACTAATGGAGATATCATAACACTTGGAACAACATCAAAAGTAATGGTTCATATTACATCACAAACTCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCGATGGCTTTGCATCGAGGAGGAAAAAGGTTTCCTATGGAAGACGTTTACTATTATCAATGGCCTCTACCTGGGCTGGATCAGTTTGGAATTTTTGGCATTTGTGATGGGCATTGTGGAGATGGGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGATAATTGCTAGTATATTATCAGATTCATTAAAAAGGGAGAGGGTTTTATCACACCGTGATGCTTCAGATATTCTTCGAGAGGCATTTTCTCAAACAGAAGCACACATGAACAACTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGTGGTGAAAATTTCTTTGCACAATGTGCTAACGTTGGAGATTCCACCTGTATTATGAGTGTGAATGGGAAACAAATCAAGATGTCAGAAGATCACAAGTTTACGAATTATTCTGAAAGACTCAGAATCGAAGAGACAGGTGAACCATTAAAAGATGGGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATTCCCGGTTCAGTTCAGAACCTTATATTAGTCAAGTTGTGCATATTGATCAAGCAAGCAAGGCTTTTGCTATTCTAGCTAGTGATGGGTTATGGAATGTCATCAGCGTGAAGAAGGCAATTCAGCTCGTGTTGCAGATGAGGGAGAGATGCTATTCAGAGAGGCAGAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAATGAGGCTAAAACACTCAGAACAAAGGATAATACTTCTGTAATTTTCTTAGACTTTGATACCTTCAACAGATTCTCTTGTAAAGTTGAATCCTAG
Predicted protein sequences of Glyma.01g239700
>Glyma.01g239700.1.p sequence-type=predicted peptide transcript=Glyma.01g239700.1 locus=Glyma.01g239700 ID=Glyma.01g239700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGPMLQTILTVLLLLMLLLIVIFLFFLFKPWRFFFSSRFLSSIKGELERPLFGDVGDASSFNRSNELPRDHDLEGACYPSEAHFRSPRTHGQVLVHKQRLQTLNMPQPQAADTLVVDVISDHSSSEDLDVGQTLKLPSSHLAQIQKHALPNFQIDRLQDFVQRDISDQRSCLTLEVISGPSQGLRYSVQSTSPSRLPLTLGRVSPSDLLIKDSEVSGKHAMIKWNLDKMKWELVDMGSLNGTLLNSTPINHPDTGSRNWGDPMNLTNGDIITLGTTSKVMVHITSQTQHHIPFGVGMASDPMALHRGGKRFPMEDVYYYQWPLPGLDQFGIFGICDGHCGDGAAKSASKLFPEIIASILSDSLKRERVLSHRDASDILREAFSQTEAHMNNYYEGCTATVLLVWTDGGENFFAQCANVGDSTCIMSVNGKQIKMSEDHKFTNYSERLRIEETGEPLKDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDQASKAFAILASDGLWNVISVKKAIQLVLQMRERCYSERQNTAEKIASLLLNEAKTLRTKDNTSVIFLDFDTFNRFSCKVES*






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