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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G47480.1 | AT | alpha/beta-Hydrolases superfamily protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0009056 | GO-bp | catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009717 | GO-bp | isoflavonoid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009813 | GO-bp | flavonoid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0046287 | GO-bp | isoflavonoid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0033987 | GO-mf | 2-hydroxyisoflavanone dehydratase activity | EnsemblGenomes | N/A | IEA |
| GO:0052689 | GO-mf | carboxylic ester hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG1515 | KOG | Arylacetamide deacetylase | JGI | N/A | IEA |
| PTHR23024 | Panther | MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES | JGI | N/A | IEA |
| PTHR23024:SF10 | Panther | JGI | N/A | IEA | |
| PF07859 | PFAM | alpha/beta hydrolase fold | JGI | N/A | IEA |
| PWY-2002 | SoyCyc9 | isoflavonoid biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-2055 | SoyCyc9 | superpathway of pterocarpan biosynthesis (via daidzein) | Plant Metabolic Network | ISS | |
| PWY-2083 | SoyCyc9 | isoflavonoid biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-2229 | SoyCyc9 | superpathway of pterocarpan biosynthesis (via formononetin) | Plant Metabolic Network | ISS | |
| PWY-2321 | SoyCyc9 | formononetin biosynthesis | Plant Metabolic Network | ISS | |
| PWY-3097 | SoyCyc9 | superpathway of isoflavonoids (via naringenin) | Plant Metabolic Network | ISS | |
| GN7V-42503 | SoyCyc9-rxn | 2-hydroxyisoflavanone dehydratase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| HIDH | 2-hydroxyisoflavanone dehydratase |
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Glyma.01g239600 not represented in the dataset |
Glyma.01g239600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.11g004200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g45020 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g239600.1 sequence-type=CDS polypeptide=Glyma.01g239600.1.p locus=Glyma.01g239600 ID=Glyma.01g239600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGAAGGAGATAGTGAAAGAGCTTCTTCCTCTAATTCGAGTGTACAAGGATGGCAGCGTGGAGCGTCTTCTAAGCTCTGAAAACGTGGCAGCCTCCCCTGAAGATCCCCAAACTGGAGTCTCATCCAAAGACATAGTCATCGCAGACAACCCCTACGTCTCCGCTCGCATTTTCCTTCCCAAATCCCACCACACTAACAACAAACTCCCCATCTTCCTCTACTTCCACGGTGGCGCCTTTTGCGTCGAATCCGCCTTCTCCTTTTTCGTCCACCGCTATCTCAACATCTTGGCCTCAGAAGCCAACATAATAGCCATCTCCGTCGACTTCAGACTCCTCCCACACCACCCTATCCCTGCTGCCTACGAAGACGGTTGGACCACCCTCAAATGGATTGCTTCCCACGCCAACAACACCAACACCACCAACCCGGAGCCATGGCTACTCAACCACGCCGACTTCACCAAAGTCTACGTAGGAGGTGAAACCAGCGGTGCTAACATCGCACACAACCTGCTTTTGCGTGCAGGTAACGAATCCCTCCCCGGGGATCTGAAAATATTGGGTGGATTACTATGCTGCCCCTTCTTCTGGGGCTCGAAGCCAATTGGGTCGGAGGCTGTTGAGGGGCACGAGCAGAGTTTGGCCATGAAGGTCTGGAACTTTGCCTGCCCTGATGCCCCCGGTGGAATCGATAACCCCTGGATCAACCCCTGTGTTCCTGGGGCACCCTCTTTGGCCACTCTTGCCTGCTCTAAGTTGCTCGTTACTATCACTGGCAAAGACGAGTTCAGAGACAGAGATATTCTCTACCACCACACCGTTGAGCAAAGTGGCTGGCAAGGTGAACTTCAACTCTTTGATGCTGGCGATGAGGAGCATGCTTTCCAGCTCTTCAAGCCTGAGACTCATCTTGCTAAAGCCATGATCAAACGCTTGGCTTCTTTTCTGGTTTGA
>Glyma.01g239600.1.p sequence-type=predicted peptide transcript=Glyma.01g239600.1 locus=Glyma.01g239600 ID=Glyma.01g239600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAKEIVKELLPLIRVYKDGSVERLLSSENVAASPEDPQTGVSSKDIVIADNPYVSARIFLPKSHHTNNKLPIFLYFHGGAFCVESAFSFFVHRYLNILASEANIIAISVDFRLLPHHPIPAAYEDGWTTLKWIASHANNTNTTNPEPWLLNHADFTKVYVGGETSGANIAHNLLLRAGNESLPGDLKILGGLLCCPFFWGSKPIGSEAVEGHEQSLAMKVWNFACPDAPGGIDNPWINPCVPGAPSLATLACSKLLVTITGKDEFRDRDILYHHTVEQSGWQGELQLFDAGDEEHAFQLFKPETHLAKAMIKRLASFLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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