Report for Sequence Feature Glyma.01g229700
Feature Type: gene_model
Chromosome: Gm01
Start: 55739251
stop: 55743684
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.01g229700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G28060.1 AT
Pre-mRNA-splicing factor 3
JGI N/A IEA
GO:0000398 GO-bp
mRNA splicing, via spliceosome
EnsemblGenomes N/A IEA
GO:0046540 GO-cc
U4/U6 x U5 tri-snRNP complex
EnsemblGenomes N/A IEA
KOG2769
KOG
Putative u4/u6 small nuclear ribonucleoprotein
JGI N/A IEA
PTHR14212 Panther
U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED
JGI N/A IEA
PF06544 PFAM
Protein of unknown function (DUF1115)
JGI N/A IEA
PF08572 PFAM
pre-mRNA processing factor 3 (PRP3)
JGI N/A IEA
Expression Patterns of Glyma.01g229700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.01g229700
Paralog Evidence Comments
Glyma.11g012500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.01g229700 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma01g43990 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.01g229700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.01g229700.1 sequence-type=CDS polypeptide=Glyma.01g229700.1.p locus=Glyma.01g229700 ID=Glyma.01g229700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGACAGAGTCAAATCTGAAAAGAGAAGCAGAGATCGACACTTGGAACGTGACGACAAATACCATCGCGATTCTGATGATCACCGCCGTCATCGATCAGACAGGAATCACAAGCGTGACCACAAATCAAGGGATAGGGATAGGACTTATGACAGAGAAGGAAGCAGGGATAGGGATTACGAAAGAGAGGGTAGCAAAGATAGGTTGAAGGTGAACCGTGATGAGGGGAGGGAAGATTTGGTGGAGCCACGACTCTCCTCACATTCTCATAAGCGGAAAGAGAGGGAGCACAGTGAGGACAGGGACTATGAGGATAAGAAAATTAGGGTTTCTGAGGAGAGGAAGGAAGGGAGGAGGGAACGGAGGAAATTTGGGGATAAAGTCAAGAAGGAGGAAGAAGAAGAAGATGGTAATGATAATATTAGAGGCATTCATGAGGCCAAGGTCAAGGAGGAAGTCGCTGATGGTGCCCATGGCTCAGCTTCTTCCAATGACACTGCGTTTATCCAAAATGGTGCCTTGGGATCACCTGCTGTGGCGCCCATGAGTGTGCCTGAGACATCTTTGGCTCCTCCTTCTTGCTTTCCTATCAAGGTATCTTCGAATTCTACCACAAATGAAAATAAGGGCGTTAGTATTATCAGGTCTCATGAGGTTACTGGAAAATCTAGTACAGATGGGTCATCTTCAGCTGCTGGAAAAACTGGGAGCCTCTCTATTGATGCCCTAGCTAAGGCTAAGAAAGCTTTACAAATGCAGAAAGAGTTGTCAGAAAAGCTAAAGAAAATTCCTCAGTTGAATAAGAGTTCTAGCCAAAATTCACAAGGAAGCTCGAACTTGGGTTCAATGAATGAATCTGCAGTACCCTCTTCTGCTGCTGGAGTGGCATTAAAAAGTTCCACCTCAGCTTCTTTGGGCCATGTTGCAAATATGTCAATGTTCCCCTCAACTGCTTTTGCTGCTTCTGCTAATACTCCAGTAATTGGCACTAGTGCTGTTGGTATTCCAAATGCAACTCTGCCCAACTTGGAAGCTGTCAGGCGTGCTCAGGAGCTTGCTGCCAGGATGGGATTTCGTCAAGATCCACAATTTGCTCCTCTGATAAATATGTTTCCTGGTCAGATGGTAACAGATGTTGCTCTCCTGCAGAAACCCACAAAGGCCCCTGTTCTTCGTCTTGATGCTCAGGGACGGGAAATAGATGAGCAGGGAAATGTTATTAATGTGACTAAGCCCATCAACCTTAGCACATTAAAGGTCAACATTAACAAACAAAAGAAAGAAGCATTTGAAATACTACAGCCTGTATTGGATGTCGATCCTGAATCTAATCCTCATTTTGATGCAAGCATGGGTATCAACAAAACAAAGCTCCTGCGGCCCAAGAGGATGAATTTCCAATTTGTGGAGGAAGGAAAATGGTCAAAAGATGCTGAAACAATAAAATTGAAGAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAGTTGGCAAAGGCAAAGGCTGCTCCTGATATAAATCCTAACTTAATAGAAATAACAGAGAGAGTTGTAATTAAAGAAAAGCCCAAGGACCAAATTCCAGAGATTGAGTGGTGGGATGTGCCTCTTCTGCATTCTGGAAATTATGGTGATGTTGATAATGGAATCATAGGCGAAGATAAACTGAAAATAGAAAAAATCAATTTTTATGTGGAGCATCCTCGTCCAATTGAGCCACCTGCTGAGCCTGCTCCCCCACCTCCTCAACCACTCAAGCTAACTAAGCAAGAGCAGAAGAAACTCCGGACGCAAAGACGTATAGCTAAGGAGAAAGAGCGACAGGAGATGATAAGACAGGGTGTCATAGAACCACCAAAACCAAAGGTCAAGATTAGCAATTTAATGAAAGTACTTGGCTCTGAAGCAACTCAAGATCCTACTCGGCTCGAAAAAGAAATACGTACCGCAGCTGCAGAGCGTGAGCAGGCTCACATAGATAGGAACATTGCACGCAAGCTTACTCCTGCCGAGCTGCGGGAGAAGAAGGAGAGGAAGCTGTTTGATGACCCAAATACACTGGAGACACTTGTCTCTCTTTACAGGATAAATGACCTCTCACATCCGAAGGCCCGATTCAGAGTTGATGTTAATGCTCAAGAGAACCGTTTGACTGGATGTGCTGTGATTTGTGATGGTATTAGTGTTGTTGTTGTTGAAGGTGGAAGCAAGTCAATTAAGAGGTATGGGAAACTTATGCTTAGACGTATTAATTGGAGTGAAGTTTCAAAAGAGAAAGAAGAAAATGAAGATTCAGATGATGACAAGCCTGCCAATAAGTGTGTTCTGGTGTGGCAAGGAAGTGTTGCCAAACCCAGCTTCTATAGGTTCAGTGTCCATGATTGCATCACCGAAGCAGCTGCCCGAAAAGTTTTTGTGGATGCTGGTGTTCCTCATTATTGGGACCAAGCCGTGAACTACAAAGAAGATGAAGCTGTTTAA
Predicted protein sequences of Glyma.01g229700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.01g229700.1.p sequence-type=predicted peptide transcript=Glyma.01g229700.1 locus=Glyma.01g229700 ID=Glyma.01g229700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDDRVKSEKRSRDRHLERDDKYHRDSDDHRRHRSDRNHKRDHKSRDRDRTYDREGSRDRDYEREGSKDRLKVNRDEGREDLVEPRLSSHSHKRKEREHSEDRDYEDKKIRVSEERKEGRRERRKFGDKVKKEEEEEDGNDNIRGIHEAKVKEEVADGAHGSASSNDTAFIQNGALGSPAVAPMSVPETSLAPPSCFPIKVSSNSTTNENKGVSIIRSHEVTGKSSTDGSSSAAGKTGSLSIDALAKAKKALQMQKELSEKLKKIPQLNKSSSQNSQGSSNLGSMNESAVPSSAAGVALKSSTSASLGHVANMSMFPSTAFAASANTPVIGTSAVGIPNATLPNLEAVRRAQELAARMGFRQDPQFAPLINMFPGQMVTDVALLQKPTKAPVLRLDAQGREIDEQGNVINVTKPINLSTLKVNINKQKKEAFEILQPVLDVDPESNPHFDASMGINKTKLLRPKRMNFQFVEEGKWSKDAETIKLKSKFGEAQAKEHKAKQAQLAKAKAAPDINPNLIEITERVVIKEKPKDQIPEIEWWDVPLLHSGNYGDVDNGIIGEDKLKIEKINFYVEHPRPIEPPAEPAPPPPQPLKLTKQEQKKLRTQRRIAKEKERQEMIRQGVIEPPKPKVKISNLMKVLGSEATQDPTRLEKEIRTAAAEREQAHIDRNIARKLTPAELREKKERKLFDDPNTLETLVSLYRINDLSHPKARFRVDVNAQENRLTGCAVICDGISVVVVEGGSKSIKRYGKLMLRRINWSEVSKEKEENEDSDDDKPANKCVLVWQGSVAKPSFYRFSVHDCITEAAARKVFVDAGVPHYWDQAVNYKEDEAV*