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Report for Sequence Feature Glyma.01g229300

Feature Type:gene_model
Chromosome:Gm01
Start:55713111
stop:55715071
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g229300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G43190.1AT ribonuclease P family protein JGI N/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0090501GO-bp RNA phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0000172GO-cc ribonuclease MRP complex EnsemblGenomesN/AIEA
GO:0030677GO-cc ribonuclease P complex EnsemblGenomesN/AIEA
GO:0000171GO-mf ribonuclease MRP activity EnsemblGenomesN/AIEA
GO:0004526GO-mf ribonuclease P activity EnsemblGenomesN/AIEA
GO:0033204GO-mf ribonuclease P RNA binding EnsemblGenomesN/AIEA
PTHR13348Panther RIBONUCLEASE P JGI N/AIEA

Expression Patterns of Glyma.01g229300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g229300 not represented in the dataset
Glyma.01g229300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g229300
ParalogEvidenceComments
Glyma.11g012100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g229300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g43946 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g229300
>Glyma.01g229300.1 sequence-type=CDS polypeptide=Glyma.01g229300.1.p locus=Glyma.01g229300 ID=Glyma.01g229300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGTCCGTGGCTGAAGATTCAAGGAAAGGCACATTGGAGGCTTTGGAGAGAAGAATAGCTTTTGCTAAAGTTGAAGTTCTCCAAAAAGAAAAGAAAAACAAAAAGGCTGTAAATGAAGATGGGAAACCACCTATTCCTGCAGATTCTACTTCTAATGATCGTTCCCCACATTTGTTGCATTCATCATCAATCACACCCAAGAAAGGGAATTTCAGTTTCTCCAGTCATACCACTTTGCAAGACATTGAAGATGGTCCAGCATATGCCCAATTTTCTGTGACTGTAAATGAAAATCTGCTCACAACTAATGAGAAGTTTTCTGCTGAAAGAGGACGTTCAATTGATGGCATATTGCACGAGCTTCTTCAGAAGGGAGATGCAGCACAAAAGTACATGCAAGGATCTAGAAACATGAAAATTGACAATTGGATCCTTCTTGATAATTATGTGCACGGACGGGTGCTTTCTTCTGGTTCTCAAACTAGGGCTTTGCAACTTCATTCAAAACGCTCTAAGAAACACATGTCTATGAAACGGCATAAGAAGTATGGATCATTAGAACTTCCTCAAGAGTTCCAGAAATTCGATATTTTCAAGCCAATGCATGAAATGTGGAAAGATTATATAATGCTGCTTCTTAAATCCACTGGGAAAAATCAATTGGCTCAATGTCTCCTTGGTGCAGATCCACATGGTGCTTTTATTTTAGGTTTGAGCACACTCTTTTACTTTTGA
Predicted protein sequences of Glyma.01g229300
>Glyma.01g229300.1.p sequence-type=predicted peptide transcript=Glyma.01g229300.1 locus=Glyma.01g229300 ID=Glyma.01g229300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
VSVAEDSRKGTLEALERRIAFAKVEVLQKEKKNKKAVNEDGKPPIPADSTSNDRSPHLLHSSSITPKKGNFSFSSHTTLQDIEDGPAYAQFSVTVNENLLTTNEKFSAERGRSIDGILHELLQKGDAAQKYMQGSRNMKIDNWILLDNYVHGRVLSSGSQTRALQLHSKRSKKHMSMKRHKKYGSLELPQEFQKFDIFKPMHEMWKDYIMLLLKSTGKNQLAQCLLGADPHGAFILGLSTLFYF*






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