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Report for Sequence Feature Glyma.01g228100

Feature Type:gene_model
Chromosome:Gm01
Start:55623071
stop:55630151
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g228100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03415.1AT Transcription factor DP JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0007049GO-bp cell cycle EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005667GO-cc transcription factor complex EnsemblGenomesN/AIEA
GO:0005667GO-cc transcription factor complex JGI N/AIEA
GO:0000981GO-mf RNA polymerase II transcription factor activity, sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
KOG2829 KOG E2F-like protein JGI N/AIEA
PTHR12548Panther TRANSCRIPTION FACTOR DP JGI N/AIEA
PTHR12548:SF1Panther JGI N/AIEA
PF02319PFAM E2F/DP family winged-helix DNA-binding domain JGI N/AIEA
PF08781PFAM Transcription factor DP JGI N/AIEA

Expression Patterns of Glyma.01g228100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g228100
ParalogEvidenceComments
Glyma.11g010800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g228100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g43800 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g228100
>Glyma.01g228100.1 sequence-type=CDS polypeptide=Glyma.01g228100.1.p locus=Glyma.01g228100 ID=Glyma.01g228100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAACACAACCCCAGCAAACATTTTGGGAGGAAGAGGATGAGGAGATGCAAGGCCGTGGAACCACTATCTCAGGTCAATCAATGTCAACAAGCAGAAGTTTGGGGTCTCCATCCAGCCGGAGTGAACAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGTGCTATTGGAGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCTGAATTTGCTGATCCAATCAATGGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTCCCTCGTACTAGTCTAAGTGATATGGAAGAGCTAAAGTCGGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAACTATATAGCTCAGGAAATGCTCCCAATGGAGGTGTATCTTTGCCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAGGCAATGAAACTTTGTGAGGGATCTCATAATGATAATACAACAGACAATCCTACAGATGGTGGTGAAGGTTCTAGCATATATGCACAGGTTCCTACTTCTGTTTCAAACCCTCCAAATAGGCCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA
Predicted protein sequences of Glyma.01g228100
>Glyma.01g228100.1.p sequence-type=predicted peptide transcript=Glyma.01g228100.1 locus=Glyma.01g228100 ID=Glyma.01g228100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTQPQQTFWEEEDEEMQGRGTTISGQSMSTSRSLGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAIGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDMEELKSERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLCEGSHNDNTTDNPTDGGEGSSIYAQVPTSVSNPPNRPPSSPPLPGILKARVKNEH*






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