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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.01g226700

Feature Type:gene_model
Chromosome:Gm01
Start:55505550
stop:55515233
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g226700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08520.1AT ALBINA 1 JGI N/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis JGI N/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process EnsemblGenomesN/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008134GO-mf transcription factor binding JGI N/AIEA
GO:0016851GO-mf magnesium chelatase activity EnsemblGenomesN/AIEA
GO:0016851GO-mf magnesium chelatase activity JGI N/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
PF00092PFAM von Willebrand factor type A domain JGI N/AIEA
PF01078PFAM Magnesium chelatase, subunit ChlI JGI N/AIEA
CHLOROPHYLL-SYNSoyCyc9 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) Plant Metabolic Network ISS
GN7V-51355SoyCyc9-rxn magnesium chelatase Plant Metabolic Network ISS

Expression Patterns of Glyma.01g226700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g226700 not represented in the dataset
Glyma.01g226700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g226700
ParalogEvidenceComments
Glyma.11g016000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g226700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g43630 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g226700
>Glyma.01g226700.2 sequence-type=transcript locus=Glyma.01g226700 ID=Glyma.01g226700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAAGTAAAAAAAACTTGACTATTCTAATGCGTGGAGGCAAAGCCAATACGAAAAGGTGGGAAGATGGTCTTACAGAATGCCTGGAATATGATTCTGCTGGAAATATTAAAACTCGTATTATCAAGTCTCCCTTTGTTCAGATTCCTCTTGGAATCACGGAGGACAGACTCATTGGATCGGTTGATGTTGAGGAGTCTGTGAAAACAGGCACAACTGTTTTCCAGCCAGGCTTGCTTGCAGAAGCTCATAGAGGTGTTTTATATGTTGATGAAATTAATCTTTTGGATGAGGGTATCAGTAATTTGCTCCTTAATGTATTGAGTGAAGGAGTAAATACTGTTGAAAGAGAGGGGATCAGTTTCAAGCACCCTTGCAGGCCCCTTCTCATTGCCACCTATAACCCAGAAGAGGGTGCTGTTCGTGAACATCTGCTGGACCGCATTGCGATTAATTTAAGTGCAGATCTTCCAATGAGTTTTGAAAACCGTGTTGCAGCTGTTGGAATTGCCACAGAGTTTCAGGAGAACAGTAGCCAAGTATTTGAGATGGTCGAAGAGGAAACAGACAATGCAAAAACTCAGATCATCTTGGCCAGAGAGTATCTAAAAGATGTTACTCTGAACAGAGATCAATTAAAATACCTGGTTATTGAAGCTTTACGGGGTGGTTGCCAGGGACATAGAGCTGAGCTATTTGCTGCCCGTGTTGCAAAGTGCTTAGCTGCTCTGGAGGGACGGGAAAAGGTTTATGTGGATGACCTAAAAAAAGCTGTAGAATTGGTCATTCTACCCCGGTCAATCATTACTGAGAGCCCACCAGATCAACAAAATCAGCCTCCCCCCCCTCCACCTCCTCCACAAAATCAAGAATCAGGCGAAGAACAGAATGAAGAGGAAGAACAAGAGGATGACAAGGATGAAGAGAATGAACAACAGCAAGAACAATTACCTGAAGAGTTTATCTTTGATGCTGAAGGTGGCTTGGTAGATGAAAAACTCCTCTTCTTTGCCCAGCAAGCACAGAGACGCCGCGGGAGGGCTGGAAGGGCAAAAAATGTAATATTTTCAGAGGATAGAGGCCGATACATCAAGCCAATGCTTCCAAAGGGCCCTGTAAAGAGATTAGCTGTAGATGCAACCCTTAGAGCTGCTGCACCTTATCAAAAATTGCGAAGGGAAAAAGACTCAGGAAACAGTAGAAAAGTATTTGTGGAGAAAACGGACATGAGGGCAAAGAGAATGGCACGTAAGGCAGGAGCATTGGTGATATTTGTGGTTGATGCAAGTGGAAGCATGGCATTGAACAGGATGCAGAATGCAAAAGGTGCAGCACTTAAGCTTCTGGCTGAAAGTTATACAAGCAGGGATCAGGTCTCTATAATTCCATTCCGTGGAGATGCAGCTGAAGTTCTTCTGCCACCTTCTAGATCAATTGCAATGGCAAGGAAACGTCTTGAGAGGCTTCCATGTGGTGGAGGGTCCCCACTTGCTCATGGTCTTACAACGGCTGTTAGAGTTGGATTAAATGCGGAGAAAAGTGGTGACGTTGGACGTGTGATGATTGTTGCAATCACTGATGGCAGAGCCAATATATCATTGAAAAGGTCGACTGACCCTGAAGTTGCCGCAGCTACTGATGCCCCAAAACCTTCAGCACAAGAATTGAAGGATGAAATTCTTGAGGTGGCTGGGAAGATTTATAAAGCAGGAATGTCTCTCCTTGTCATCGACACTGAAAATAAGTTTGTCTCAACGGGTTTCGCCAAGGAGATTGCTAGAGTTGCCCAAGGCAAGTATTATTATCTGCCAAATGCTTCAGACGCTGTTATCTCATCGGCAACAAAGGAAGCTTTATCAGCTTTGAAAAGTTCATGAAACCTTGTAAAAATAAAGCAGTCAAACATCACTTCCCCCTTTGGTCGTAAATGTTAATGTAAATCATGCAAACTATGTTATGATGGGAAGAACGCATGTTGTAATAACCAGGAGCAATTTTGAATCATACCAATGCTAACAAACCATAGACATGATAATGATCAGTGTTGTGTTGGCTAATTCCAAAAGATTTAAGTGAGCTCAATGGCATTTCA
Coding sequences of Glyma.01g226700
>Glyma.01g226700.1 sequence-type=CDS polypeptide=Glyma.01g226700.1.p locus=Glyma.01g226700 ID=Glyma.01g226700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTTCGCTTTGGCATTCACAGCTTCTTCTACTTGCTGCTCAAATCTACAATCTCAGTCTCTGTTATTCGCTGCTGCTGCATTGAGATCAAAACCGTGTCTCTCTCTCTGCAACACTTATCGACCCAAACGCATTCGGAAGCGTTCTCCAATTGTTGGCGCTCAATCTGAAAACGGAGCTCTCGTTACTTCCGAGAAGCCTGGCACTAATTACGGAAGACAATACTTCCCCCTCGCTGCTGTTGTAGGCCAAGATGCTATAAAAACTGCTCTTTTACTTGGGGCCATTGACCCTGGGATTGGAGGAATTGCCATATCAGGAAAGCGAGGAACTGCCAAAACTGTAATGGCACGTGGACTGCATGCAATACTGCCTCCTATTGAAGTAGTAGTAGGTTCCATAGCCAATGCGGATCCGACCTGCCCAGAAGAGTGGGAAGATGGTCTTACAGAATGCCTGGAATATGATTCTGCTGGAAATATTAAAACTCGTATTATCAAGTCTCCCTTTGTTCAGATTCCTCTTGGAATCACGGAGGACAGACTCATTGGATCGGTTGATGTTGAGGAGTCTGTGAAAACAGGCACAACTGTTTTCCAGCCAGGCTTGCTTGCAGAAGCTCATAGAGGTGTTTTATATGTTGATGAAATTAATCTTTTGGATGAGGGTATCAGTAATTTGCTCCTTAATGTATTGAGTGAAGGAGTAAATACTGTTGAAAGAGAGGGGATCAGTTTCAAGCACCCTTGCAGGCCCCTTCTCATTGCCACCTATAACCCAGAAGAGGGTGCTGTTCGTGAACATCTGCTGGACCGCATTGCGATTAATTTAAGTGCAGATCTTCCAATGAGTTTTGAAAACCGTGTTGCAGCTGTTGGAATTGCCACAGAGTTTCAGGAGAACAGTAGCCAAGTATTTGAGATGGTCGAAGAGGAAACAGACAATGCAAAAACTCAGATCATCTTGGCCAGAGAGTATCTAAAAGATGTTACTCTGAACAGAGATCAATTAAAATACCTGGTTATTGAAGCTTTACGGGGTGGTTGCCAGGGACATAGAGCTGAGCTATTTGCTGCCCGTGTTGCAAAGTGCTTAGCTGCTCTGGAGGGACGGGAAAAGGTTTATGTGGATGACCTAAAAAAAGCTGTAGAATTGGTCATTCTACCCCGGTCAATCATTACTGAGAGCCCACCAGATCAACAAAATCAGCCTCCCCCCCCTCCACCTCCTCCACAAAATCAAGAATCAGGCGAAGAACAGAATGAAGAGGAAGAACAAGAGGATGACAAGGATGAAGAGAATGAACAACAGCAAGAACAATTACCTGAAGAGTTTATCTTTGATGCTGAAGGTGGCTTGGTAGATGAAAAACTCCTCTTCTTTGCCCAGCAAGCACAGAGACGCCGCGGGAGGGCTGGAAGGGCAAAAAATGTAATATTTTCAGAGGATAGAGGCCGATACATCAAGCCAATGCTTCCAAAGGGCCCTGTAAAGAGATTAGCTGTAGATGCAACCCTTAGAGCTGCTGCACCTTATCAAAAATTGCGAAGGGAAAAAGACTCAGGAAACAGTAGAAAAGTATTTGTGGAGAAAACGGACATGAGGGCAAAGAGAATGGCACGTAAGGCAGGAGCATTGGTGATATTTGTGGTTGATGCAAGTGGAAGCATGGCATTGAACAGGATGCAGAATGCAAAAGGTGCAGCACTTAAGCTTCTGGCTGAAAGTTATACAAGCAGGGATCAGGTCTCTATAATTCCATTCCGTGGAGATGCAGCTGAAGTTCTTCTGCCACCTTCTAGATCAATTGCAATGGCAAGGAAACGTCTTGAGAGGCTTCCATGTGGTGGAGGGTCCCCACTTGCTCATGGTCTTACAACGGCTGTTAGAGTTGGATTAAATGCGGAGAAAAGTGGTGACGTTGGACGTGTGATGATTGTTGCAATCACTGATGGCAGAGCCAATATATCATTGAAAAGGTCGACTGACCCTGAAGTTGCCGCAGCTACTGATGCCCCAAAACCTTCAGCACAAGAATTGAAGGATGAAATTCTTGAGGTGGCTGGGAAGATTTATAAAGCAGGAATGTCTCTCCTTGTCATCGACACTGAAAATAAGTTTGTCTCAACGGGTTTCGCCAAGGAGATTGCTAGAGTTGCCCAAGGCAAGTATTATTATCTGCCAAATGCTTCAGACGCTGTTATCTCATCGGCAACAAAGGAAGCTTTATCAGCTTTGAAAAGTTCATGA

>Glyma.01g226700.2 sequence-type=CDS polypeptide=Glyma.01g226700.2.p locus=Glyma.01g226700 ID=Glyma.01g226700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGTGGAGGCAAAGCCAATACGAAAAGGTGGGAAGATGGTCTTACAGAATGCCTGGAATATGATTCTGCTGGAAATATTAAAACTCGTATTATCAAGTCTCCCTTTGTTCAGATTCCTCTTGGAATCACGGAGGACAGACTCATTGGATCGGTTGATGTTGAGGAGTCTGTGAAAACAGGCACAACTGTTTTCCAGCCAGGCTTGCTTGCAGAAGCTCATAGAGGTGTTTTATATGTTGATGAAATTAATCTTTTGGATGAGGGTATCAGTAATTTGCTCCTTAATGTATTGAGTGAAGGAGTAAATACTGTTGAAAGAGAGGGGATCAGTTTCAAGCACCCTTGCAGGCCCCTTCTCATTGCCACCTATAACCCAGAAGAGGGTGCTGTTCGTGAACATCTGCTGGACCGCATTGCGATTAATTTAAGTGCAGATCTTCCAATGAGTTTTGAAAACCGTGTTGCAGCTGTTGGAATTGCCACAGAGTTTCAGGAGAACAGTAGCCAAGTATTTGAGATGGTCGAAGAGGAAACAGACAATGCAAAAACTCAGATCATCTTGGCCAGAGAGTATCTAAAAGATGTTACTCTGAACAGAGATCAATTAAAATACCTGGTTATTGAAGCTTTACGGGGTGGTTGCCAGGGACATAGAGCTGAGCTATTTGCTGCCCGTGTTGCAAAGTGCTTAGCTGCTCTGGAGGGACGGGAAAAGGTTTATGTGGATGACCTAAAAAAAGCTGTAGAATTGGTCATTCTACCCCGGTCAATCATTACTGAGAGCCCACCAGATCAACAAAATCAGCCTCCCCCCCCTCCACCTCCTCCACAAAATCAAGAATCAGGCGAAGAACAGAATGAAGAGGAAGAACAAGAGGATGACAAGGATGAAGAGAATGAACAACAGCAAGAACAATTACCTGAAGAGTTTATCTTTGATGCTGAAGGTGGCTTGGTAGATGAAAAACTCCTCTTCTTTGCCCAGCAAGCACAGAGACGCCGCGGGAGGGCTGGAAGGGCAAAAAATGTAATATTTTCAGAGGATAGAGGCCGATACATCAAGCCAATGCTTCCAAAGGGCCCTGTAAAGAGATTAGCTGTAGATGCAACCCTTAGAGCTGCTGCACCTTATCAAAAATTGCGAAGGGAAAAAGACTCAGGAAACAGTAGAAAAGTATTTGTGGAGAAAACGGACATGAGGGCAAAGAGAATGGCACGTAAGGCAGGAGCATTGGTGATATTTGTGGTTGATGCAAGTGGAAGCATGGCATTGAACAGGATGCAGAATGCAAAAGGTGCAGCACTTAAGCTTCTGGCTGAAAGTTATACAAGCAGGGATCAGGTCTCTATAATTCCATTCCGTGGAGATGCAGCTGAAGTTCTTCTGCCACCTTCTAGATCAATTGCAATGGCAAGGAAACGTCTTGAGAGGCTTCCATGTGGTGGAGGGTCCCCACTTGCTCATGGTCTTACAACGGCTGTTAGAGTTGGATTAAATGCGGAGAAAAGTGGTGACGTTGGACGTGTGATGATTGTTGCAATCACTGATGGCAGAGCCAATATATCATTGAAAAGGTCGACTGACCCTGAAGTTGCCGCAGCTACTGATGCCCCAAAACCTTCAGCACAAGAATTGAAGGATGAAATTCTTGAGGTGGCTGGGAAGATTTATAAAGCAGGAATGTCTCTCCTTGTCATCGACACTGAAAATAAGTTTGTCTCAACGGGTTTCGCCAAGGAGATTGCTAGAGTTGCCCAAGGCAAGTATTATTATCTGCCAAATGCTTCAGACGCTGTTATCTCATCGGCAACAAAGGAAGCTTTATCAGCTTTGAAAAGTTCATGA
Predicted protein sequences of Glyma.01g226700
>Glyma.01g226700.1.p sequence-type=predicted peptide transcript=Glyma.01g226700.1 locus=Glyma.01g226700 ID=Glyma.01g226700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFALAFTASSTCCSNLQSQSLLFAAAALRSKPCLSLCNTYRPKRIRKRSPIVGAQSENGALVTSEKPGTNYGRQYFPLAAVVGQDAIKTALLLGAIDPGIGGIAISGKRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPEEWEDGLTECLEYDSAGNIKTRIIKSPFVQIPLGITEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLSEGVNTVEREGISFKHPCRPLLIATYNPEEGAVREHLLDRIAINLSADLPMSFENRVAAVGIATEFQENSSQVFEMVEEETDNAKTQIILAREYLKDVTLNRDQLKYLVIEALRGGCQGHRAELFAARVAKCLAALEGREKVYVDDLKKAVELVILPRSIITESPPDQQNQPPPPPPPPQNQESGEEQNEEEEQEDDKDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGRAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRREKDSGNSRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRVMIVAITDGRANISLKRSTDPEVAAATDAPKPSAQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISSATKEALSALKSS*

>Glyma.01g226700.2.p sequence-type=predicted peptide transcript=Glyma.01g226700.2 locus=Glyma.01g226700 ID=Glyma.01g226700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRGGKANTKRWEDGLTECLEYDSAGNIKTRIIKSPFVQIPLGITEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLSEGVNTVEREGISFKHPCRPLLIATYNPEEGAVREHLLDRIAINLSADLPMSFENRVAAVGIATEFQENSSQVFEMVEEETDNAKTQIILAREYLKDVTLNRDQLKYLVIEALRGGCQGHRAELFAARVAKCLAALEGREKVYVDDLKKAVELVILPRSIITESPPDQQNQPPPPPPPPQNQESGEEQNEEEEQEDDKDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGRAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRREKDSGNSRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRVMIVAITDGRANISLKRSTDPEVAAATDAPKPSAQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISSATKEALSALKSS*






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