Glyma.01g218300

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Report for Sequence Feature Glyma.01g218300

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54838494
stop:	54842120
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g218300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G30495.1	AT	Fcf2 pre-rRNA processing protein	JGI	N/A	IEA
KOG3100	KOG	Uncharacterized conserved protein	JGI	N/A	IEA
PTHR21686	Panther	UNCHARACTERIZED	JGI	N/A	IEA
PTHR21686:SF3	Panther		JGI	N/A	IEA
PF08698	PFAM	Fcf2 pre-rRNA processing	JGI	N/A	IEA

Expression Patterns of Glyma.01g218300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g218300 not represented in the dataset	Glyma.01g218300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01g218300

Paralog	Evidence	Comments
Glyma.11g024900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g218300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g42730	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g218300

Limit To All Plant Sequences

>Glyma.01g218300.2 sequence-type=transcript locus=Glyma.01g218300 ID=Glyma.01g218300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGTACTTTTTCCTTATTCACCAAAACGGCGTCGTTTTGATTTGGGGGGAAACAGCACAACACGTCGAACTACCCTCCCTCACTCAAAACCCTCGACGCTCACTCCCTCTCTCACATCGCAAGCCAGCCACCGCCTCCACTGGTGGCACTGTCATAATCCGGCGCGAAGTTGCCCCCTCAACGTGGGAGAGTGTCGCTGAAGAAGTTGTTTCGGGTACGGCTAAGAGATTTCTGGGAATCTCATCCTGAGGAATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGAATTTCTACTCATTTTAGCTGTGGGCGCAGATTATAATGCTTTTTGCAGTTTAGAATTATTACAGGTTATATGAAAATATCTTAGCTGTAAAACCTATTGATGCTGTGTGTTCTTCTATCGTGTTTGACCAATCTCTTTAAACTCTTCTGCTTGGGTTTTTCATACTTGGACCACATTATAAAATTTAGGGGAAATTGCACTCACCTCTCCAGAGGTCCTTTCAAACGACAATTACATCCCTTCTAGTTTTTAAACAAA

>Glyma.01g218300.3 sequence-type=transcript locus=Glyma.01g218300 ID=Glyma.01g218300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGTACTTTTTCCTTATTCACCAAAACGGCGTCGTTTTGATTTGGGGGGAAACAGCACAACACGTCGAACTACCCTCCCTCACTCAAAACCCTCGACGCTCACTCCCTCTCTCACATCGCAAGCCAGCCACCGCCTCCACTGGTGGCACTGTCATAATCCGGCGCGAAGTTGCCCCCTCAACGTGGGAGAGTGTCGCTGAAGAAGTTGTTTCGGGTACGGCTAAGAGATTTCTGGGAATCTCATCCTGAGGAATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGAATTTCTACTCATTTTAGCTGTGGGCGCAGATTATAATGCTTTTTGCAGTTTAGAATTATTACAGGTTATATGAAAATATCTTAGCTGTAAAACCTATTGATGCTGTGTGTTCTTCTATCGTGTTTGACCAATCTCTTTAAACTCTTCTGCTTGGGTTTTTCATACTTGGACCACATTATAAAATTTAGGGGAAATTGCACTCACCTCTCCAGAGGTCCTTTCAAACGACAATTACATCCCTTCTAGTTTTTAAACAAA

>Glyma.01g218300.4 sequence-type=transcript locus=Glyma.01g218300 ID=Glyma.01g218300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCTAGCTTATTCTCTCAACTGCATATGTTTCTTGCATTACTGGTTTGTTTAAATCAATTTATTTTTTCTAACACATCTCAGGAATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGAATTTCTACTCATTTTAGCTGTGGGCGCAGATTATAATGCTTTTTGCAGTTTAGAATTATTACAGGTTATATGAAAATATCTTAGCTGTAAAACCTATTGATGCTGTGTGTTCTTCTATCGTGTTTGACCAATCTCTTTAAACTCTTCTGCTTGGGTTTTTCATACTTGGACCACATTATAAAATTTAGGGGAAATTGCACTCACCTCTCCAGAGGTCCTTTCAAACGACAATTACATCCCTTCTAGTTTTTAAACAAA

Coding sequences of Glyma.01g218300

Limit To All Plant Sequences

>Glyma.01g218300.1 sequence-type=CDS polypeptide=Glyma.01g218300.1.p locus=Glyma.01g218300 ID=Glyma.01g218300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGA

>Glyma.01g218300.2 sequence-type=CDS polypeptide=Glyma.01g218300.2.p locus=Glyma.01g218300 ID=Glyma.01g218300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGA

>Glyma.01g218300.3 sequence-type=CDS polypeptide=Glyma.01g218300.3.p locus=Glyma.01g218300 ID=Glyma.01g218300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGA

>Glyma.01g218300.4 sequence-type=CDS polypeptide=Glyma.01g218300.4.p locus=Glyma.01g218300 ID=Glyma.01g218300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGA

Predicted protein sequences of Glyma.01g218300

Limit To All Plant Sequences

>Glyma.01g218300.1.p sequence-type=predicted peptide transcript=Glyma.01g218300.1 locus=Glyma.01g218300 ID=Glyma.01g218300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPAHKPVVGLSWQPQLPIPSSFKATDGSHTKPQTEASSSTVRKSSSELVDGLFVPPNDPRKLNKLLRKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGDSKSKTLPKYFQVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVREIEEQNRPAGNEKWKIKGSNSRKRAKERRIY*

>Glyma.01g218300.2.p sequence-type=predicted peptide transcript=Glyma.01g218300.2 locus=Glyma.01g218300 ID=Glyma.01g218300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPAHKPVVGLSWQPQLPIPSSFKATDGSHTKPQTEASSSTVRKSSSELVDGLFVPPNDPRKLNKLLRKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGWNSCRFSVGLFLRQINKEGEESNACR*

>Glyma.01g218300.3.p sequence-type=predicted peptide transcript=Glyma.01g218300.3 locus=Glyma.01g218300 ID=Glyma.01g218300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPAHKPVVGLSWQPQLPIPSSFKATDGSHTKPQTEASSSTVRKSSSELVDGLFVPPNDPRKLNKLLRKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGDSKSKTLPKYFQAGWNSCRFSVGLFLRQINKEGEESNACR*

>Glyma.01g218300.4.p sequence-type=predicted peptide transcript=Glyma.01g218300.4 locus=Glyma.01g218300 ID=Glyma.01g218300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPAHKPVVGLSWQPQLPIPSSFKATDGSHTKPQTEASSSTVRKSSSELVDGLFVPPNDPRKLNKLLRKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGDSKSKTLPKYFQVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVREIEEQNRPAGNEKWKIKGSNSRKRAKERRIY*

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