Glyma.01g217900

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Report for Sequence Feature Glyma.01g217900

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54797488
stop:	54801088
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g217900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20330.1	AT	Transcription initiation factor TFIIE, beta subunit	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	EnsemblGenomes	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005673	GO-cc	transcription factor TFIIE complex	EnsemblGenomes	N/A	IEA
GO:0005673	GO-cc	transcription factor TFIIE complex	JGI	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
KOG3095	KOG	Transcription initiation factor IIE, beta subunit	JGI	N/A	IEA
PTHR12716	Panther	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	JGI	N/A	IEA

Expression Patterns of Glyma.01g217900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g217900 not represented in the dataset	Glyma.01g217900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01g217900

Paralog	Evidence	Comments
Glyma.11g025300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g217900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g42680	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g217900

Limit To All Plant Sequences

>Glyma.01g217900.2 sequence-type=transcript locus=Glyma.01g217900 ID=Glyma.01g217900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTACGCTGCGCATGTGCCGAAATAAAAAGTAGTCTCCTTCTGCCCTCTGGAGGAGAAATACCTGTCTGTCACGATGGCGTTTCAGGAAAAGCAAAACAGGTTTAAGAGGCAGCCAGAGAAGAGTGCCCCTGCTTCACAAAATGGAAGAACTTCAGCTCCTATTAAATTCTCTAACGATACCGAAAGGCTCCAGCATGTTAATAGCATACGCAAAGCCCCTGTTGGGGCTCAGATGAAGCGTGTTATTGATCTCCTATTTGAGACCCGGAAGGCTTTAACGATAGAGCAAATAAATGAAGCGTGTTACGTGGACATGAGGGCTAATAAAGATGTTTTCGAGAGTATGAGGAAAAACCCAAAAGTAAAATATGATGGGGAAAGATTCTCTTACAAGTCGAAGCATGCCGTTAGGGACAAAAATCAGCTGCTTTTCCTGGTACGTAAGTTTCCAGAGGGCATTGCTGTGGTTGACCTAAAAGATTCTTACCCAAATGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGTTATCCAACTTTGACTCTCAAGAGGACATTGCCTACCCGAACGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAGCAGCTTTTTCGGGGGATTGAATTGCCTCGTGATATGATTGACATAGAGAGGGATCTACAAAAAAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGAGTGCAGCGCAAATGGAAGGCATTTCATCCAAGCCTAAACCTAAGAAGAAGAAAAATGAAATCACTAAGAGGACCAAGCTGACTAATGCCCATCTTCCGGAGCTTTTTCAGAACTTAAAGTAAACAATTCCTGACTTAAGGAACTCGTGGCAAGTGGTGAATGAATTCACATAGCTCATTTGTTGACATAAAACATGCAGTTAGAATGTCTTCATGTCTTTCAGATGGATATGGCCTTTTTATTGTATTAGCATACTGCTTCTGTTATGGATGTACCCAATAGGATGGAAACGGTGGCCATTGCAAATTCAGGTCATTCCTTCTATCTAGGCTTCTAAAGCAAAAGGGCAAGGATGGTCAGAATCCATCTTCTGGTGATTTTTCTAAAGACTAAACAAAAGGGCAGATGGCGAACCATGTTAGCGAACACGGTCAATTAGCAGAGTGAAAAATATTGACGAGGTTCATCATTTGGGGTTTATTGCTCAGCCTAATTGGATGTTATCACCTATTGCTACTTTTTATACATATACAAAGAGTCAAATGCATATTGCATAGCTGAAGTTTGACTCATTTTCACCTTTTAATGCGCAAAAATGATCTATTGCTACATGTAGCAAAAGTGATACTTCAACTTTTTACAAGAA

>Glyma.01g217900.3 sequence-type=transcript locus=Glyma.01g217900 ID=Glyma.01g217900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTACGCTGCGCATGTGCCGAAATAAAAAGTAGTCTCCTTCTGCCCTCTGGAGGAGAAATACCTATGGCGTTTCAGGAAAAGCAAAACAGGTTTAAGAGGCAGCCAGAGAAGAGTGCCCCTGCTTCACAAAATGGAAGAACTTCAGCTCCTATTAAATTCTCTAACGATACCGAAAGGCTCCAGCATGTTAATAGCATACGCAAAGCCCCTGTTGGGGCTCAGATGAAGCGTGTTATTGATCTCCTATTTGAGACCCGGAAGGCTTTAACGATAGAGCAAATAAATGAAGCGTGTTACGTGGACATGAGGGCTAATAAAGATGTTTTCGAGAGTATGAGGAAAAACCCAAAAGTAAAATATGATGGGGAAAGATTCTCTTACAAGTCGAAGCATGCCGTTAGGGACAAAAATCAGCTGCTTTTCCTGGTACGTAAGTTTCCAGAGGGCATTGCTGTGGTTGACCTAAAAGATTCTTACCCAAATGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGTTATCCAACTTTGACTCTCAAGAGGACATTGCCTACCCGAACGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAGCAGCTTTTTCGGGGGATTGAATTGCCTCGTGATATGATTGACATAGAGAGGGATCTACAAAAAAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGAGTGCAGCGCAAATGGAAGGCATTTCATCCAAGCCTAAACCTAAGAAGAAGAAAAATGAAATCACTAAGAGGACCAAGCTGACTAATGCCCATCTTCCGGAGCTTTTTCAGAACTTAAAGTAAACAATTCCTGACTTAAGGAACTCGTGGCAAGTGGTGAATGAATTCACATAGCTCATTTGTTGACATAAAACATGCAGTTAGAATGTCTTCATGTCTTTCAGATGGATATGGCCTTTTTATTGTATTAGCATACTGCTTCTGTTATGGATGTACCCAATAGGATGGAAACGGTGGCCATTGCAAATTCAGGTCATTCCTTCTATCTAGGCTTCTAAAGCAAAAGGGCAAGGATGGTCAGAATCCATCTTCTGGTGATTTTTCTAAAGACTAAACAAAAGGGCAGATGGCGAACCATGTTAGCGAACACGGTCAATTAGCAGAGTGAAAAATATTGACGAGGTTCATCATTTGGGGTTTATTGCTCAGCCTAATTGGATGTTATCACCTATTGCTACTTTTTATACATATACAAAGAGTCAAATGCATATTGCATAGCTGAAGTTTGACTCATTTTCACC

Coding sequences of Glyma.01g217900

Limit To All Plant Sequences

>Glyma.01g217900.1 sequence-type=CDS polypeptide=Glyma.01g217900.1.p locus=Glyma.01g217900 ID=Glyma.01g217900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTTCAGGAAAAGCAAAACAGGTTTAAGAGGCAGCCAGAGAAGAGTGCCCCTGCTTCACAAAATGGAAGAACTTCAGCTCCTATTAAATTCTCTAACGATACCGAAAGGCTCCAGCATGTTAATAGCATACGCAAAGCCCCTGTTGGGGCTCAGATGAAGCGTGTTATTGATCTCCTATTTGAGACCCGGAAGGCTTTAACGATAGAGCAAATAAATGAAGCGTGTTACGTGGACATGAGGGCTAATAAAGATGTTTTCGAGAGTATGAGGAAAAACCCAAAAGTAAAATATGATGGGGAAAGATTCTCTTACAAGTCGAAGCATGCCGTTAGGGACAAAAATCAGCTGCTTTTCCTGGTACGTAAGTTTCCAGAGGGCATTGCTGTGGTTGACCTAAAAGATTCTTACCCAAATGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGTTATCCAACTTTGACTCTCAAGAGGACATTGCCTACCCGAACGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAGCAGCTTTTTCGGGGGATTGAATTGCCTCGTGATATGATTGACATAGAGAGGGATCTACAAAAAAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGAGTGCAGCGCAAATGGAAGGCATTTCATCCAAGCCTAAACCTAAGAAGAAGAAAAATGAAATCACTAAGAGGACCAAGCTGACTAATGCCCATCTTCCGGAGCTTTTTCAGAACTTAAAGTAA

>Glyma.01g217900.2 sequence-type=CDS polypeptide=Glyma.01g217900.2.p locus=Glyma.01g217900 ID=Glyma.01g217900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTTCAGGAAAAGCAAAACAGGTTTAAGAGGCAGCCAGAGAAGAGTGCCCCTGCTTCACAAAATGGAAGAACTTCAGCTCCTATTAAATTCTCTAACGATACCGAAAGGCTCCAGCATGTTAATAGCATACGCAAAGCCCCTGTTGGGGCTCAGATGAAGCGTGTTATTGATCTCCTATTTGAGACCCGGAAGGCTTTAACGATAGAGCAAATAAATGAAGCGTGTTACGTGGACATGAGGGCTAATAAAGATGTTTTCGAGAGTATGAGGAAAAACCCAAAAGTAAAATATGATGGGGAAAGATTCTCTTACAAGTCGAAGCATGCCGTTAGGGACAAAAATCAGCTGCTTTTCCTGGTACGTAAGTTTCCAGAGGGCATTGCTGTGGTTGACCTAAAAGATTCTTACCCAAATGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGTTATCCAACTTTGACTCTCAAGAGGACATTGCCTACCCGAACGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAGCAGCTTTTTCGGGGGATTGAATTGCCTCGTGATATGATTGACATAGAGAGGGATCTACAAAAAAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGAGTGCAGCGCAAATGGAAGGCATTTCATCCAAGCCTAAACCTAAGAAGAAGAAAAATGAAATCACTAAGAGGACCAAGCTGACTAATGCCCATCTTCCGGAGCTTTTTCAGAACTTAAAGTAA

>Glyma.01g217900.3 sequence-type=CDS polypeptide=Glyma.01g217900.3.p locus=Glyma.01g217900 ID=Glyma.01g217900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTTCAGGAAAAGCAAAACAGGTTTAAGAGGCAGCCAGAGAAGAGTGCCCCTGCTTCACAAAATGGAAGAACTTCAGCTCCTATTAAATTCTCTAACGATACCGAAAGGCTCCAGCATGTTAATAGCATACGCAAAGCCCCTGTTGGGGCTCAGATGAAGCGTGTTATTGATCTCCTATTTGAGACCCGGAAGGCTTTAACGATAGAGCAAATAAATGAAGCGTGTTACGTGGACATGAGGGCTAATAAAGATGTTTTCGAGAGTATGAGGAAAAACCCAAAAGTAAAATATGATGGGGAAAGATTCTCTTACAAGTCGAAGCATGCCGTTAGGGACAAAAATCAGCTGCTTTTCCTGGTACGTAAGTTTCCAGAGGGCATTGCTGTGGTTGACCTAAAAGATTCTTACCCAAATGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGTTATCCAACTTTGACTCTCAAGAGGACATTGCCTACCCGAACGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAGCAGCTTTTTCGGGGGATTGAATTGCCTCGTGATATGATTGACATAGAGAGGGATCTACAAAAAAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGAGTGCAGCGCAAATGGAAGGCATTTCATCCAAGCCTAAACCTAAGAAGAAGAAAAATGAAATCACTAAGAGGACCAAGCTGACTAATGCCCATCTTCCGGAGCTTTTTCAGAACTTAAAGTAA

Predicted protein sequences of Glyma.01g217900

Limit To All Plant Sequences

>Glyma.01g217900.1.p sequence-type=predicted peptide transcript=Glyma.01g217900.1 locus=Glyma.01g217900 ID=Glyma.01g217900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFQEKQNRFKRQPEKSAPASQNGRTSAPIKFSNDTERLQHVNSIRKAPVGAQMKRVIDLLFETRKALTIEQINEACYVDMRANKDVFESMRKNPKVKYDGERFSYKSKHAVRDKNQLLFLVRKFPEGIAVVDLKDSYPNVMEDLQALKAAREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLK*

>Glyma.01g217900.2.p sequence-type=predicted peptide transcript=Glyma.01g217900.2 locus=Glyma.01g217900 ID=Glyma.01g217900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFQEKQNRFKRQPEKSAPASQNGRTSAPIKFSNDTERLQHVNSIRKAPVGAQMKRVIDLLFETRKALTIEQINEACYVDMRANKDVFESMRKNPKVKYDGERFSYKSKHAVRDKNQLLFLVRKFPEGIAVVDLKDSYPNVMEDLQALKAAREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLK*

>Glyma.01g217900.3.p sequence-type=predicted peptide transcript=Glyma.01g217900.3 locus=Glyma.01g217900 ID=Glyma.01g217900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFQEKQNRFKRQPEKSAPASQNGRTSAPIKFSNDTERLQHVNSIRKAPVGAQMKRVIDLLFETRKALTIEQINEACYVDMRANKDVFESMRKNPKVKYDGERFSYKSKHAVRDKNQLLFLVRKFPEGIAVVDLKDSYPNVMEDLQALKAAREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLK*

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