Glyma.01g215500

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Report for Sequence Feature Glyma.01g215500

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54604652
stop:	54610266
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g215500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11820.2	AT	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase	JGI	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006694	GO-bp	steroid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0008202	GO-bp	steroid metabolic process	EnsemblGenomes	N/A	IEA
GO:0008299	GO-bp	isoprenoid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0008299	GO-bp	isoprenoid biosynthetic process	JGI	N/A	IEA
GO:0016126	GO-bp	sterol biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0004421	GO-mf	hydroxymethylglutaryl-CoA synthase activity	EnsemblGenomes	N/A	IEA
GO:0004421	GO-mf	hydroxymethylglutaryl-CoA synthase activity	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
KOG1393	KOG	Hydroxymethylglutaryl-CoA synthase	JGI	N/A	IEA
PTHR11877	Panther	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	JGI	N/A	IEA
PTHR11877:SF10	Panther	HMG COENZYME A SYNTHASE, ISOFORM A	JGI	N/A	IEA
PF01154	PFAM	Hydroxymethylglutaryl-coenzyme A synthase N terminal	JGI	N/A	IEA
PF08540	PFAM	Hydroxymethylglutaryl-coenzyme A synthase C terminal	JGI	N/A	IEA
PWY-5910	SoyCyc9	superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)	Plant Metabolic Network		ISS
PWY-922	SoyCyc9	mevalonate pathway I	Plant Metabolic Network		ISS
GN7V-40939	SoyCyc9-rxn	hydroxymethylglutaryl-CoA synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.01g215500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g215500 not represented in the dataset	Glyma.01g215500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01g215500

Paralog	Evidence	Comments
Glyma.11g027000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g215500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g42450	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g215500

Limit To All Plant Sequences

>Glyma.01g215500.2 sequence-type=transcript locus=Glyma.01g215500 ID=Glyma.01g215500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAAGCGGTGGTAAAAAAAAGGGAAAAAAAGAGAAAAGGACGTGGTGTGTGTTTGGGTTGGGTCCTGCTTCTACTTGTACACCTCACCACTGGCTGTTTCCTTTATATATATGCTAAAGTTCCCAACACTTGCCATGTGAGTTTCTCTGCACTCGATCAAACACAAAATGGAAAAGAATGTGGGGATTCTCGCCATTGACATCTACTTCCCTCCCGCTTGCGTTCAGCAGGAAGCATTGGAGACTCATGATGGTGCCAGTAAAGGGAAGTATACCATTGGACTTGGCCAAGACTGCATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATCGGTCGTCTGGAAGTTGGAAGCGAGACCGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTCGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTCTGTTTAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCCCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGTTTACGATTTTTACAAACCTAATCTTGCCAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTGTTGATTCTTGCTATAAGAATTTCTGTCACAAGTTTCAGAAATTCCAGGGAAAACAATTTTCTCTTTTTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGCTCGGTTGTTTTTCAATGACTTCTTGATGAATTCCAGCTCTGCGGATGAGGTTGCCAAAGAAAAACTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCTACTTGCAAAGCCTCTATATGATCAGAAGGTACAACCAACTACTTTGATTCCAAAGCAAGTTGGAAACATGTACACTGCGTCTCTTTATGCAGCATTTGCCTCCCTCATTCACAACAAACATAGCACATTGGTGAATGTTCTGACCACTATCTATGATCAAGCTTCTTCACAACAATGTTTCGTGCTTTCTAATGAATATTTACATTTTTCAATTTTCAGGCAGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTGCCACAATGTTTTCTTTGCAATTACGAGACAGTCAACATCCGTTTAGCTTGTCAAACATGGCTAGAGTGATGAATGTCGATGGAAAATTGAAGTCAAGACATGAGTTTCCCCCGGAGGAGTTTGTTGAAAACTTGAAGTTAATGGAGCATAGATATGGTGCGAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTTTATCTCCGGGCACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGATTCTATTCAAAGAAAACTAAAGAAAGCAGTTTGACTCACGCTGAGAACGGTGTGATTGCTAATGGCGTTGCTAATGGCCACTGATGTTGAGCATGTACAATCAGCAGTCAACTTCGCCTAGAATGAGGAAGGGTATTGTTATTTGCGAAGTTCTGTTGGTAAATTGTTTCTGGGGTGGCAAGTGTTATCGATTCAAACATTTTATTGTATTCTTTTAAGATGTAGCTAGTTACTCTAGTCTAAGTCTTGTACACACAAAAAAAAAAAGTTACTCAAGTCTAAATTTTATCTTTTTCTGTGTATTTTTTGCATTTTAGTGAATGGAAATTAGTCTTTGAATAAAAAAAAGTTGCAATAACTTTTATTCAGGTGGGTTATATGAATCACATGATGGGGTTGGACTCAATTAAAAATCAAATTTTTAGGATTATTTATCATATAATCTCTTTTAATAGTTTTCTTTAGCGTCATTCTTGGACTTTTTTCTATCCTTTTTTTTACAGGTACAAGACTTTCTTCTATCAGTATCTTCACCTGAATCGATTCTGTCGTCCTTTTCTTGACAAGTGTTATATTAATAATACATCATTGTATATAGTTGTTCTGTAA

Coding sequences of Glyma.01g215500

Limit To All Plant Sequences

>Glyma.01g215500.1 sequence-type=CDS polypeptide=Glyma.01g215500.1.p locus=Glyma.01g215500 ID=Glyma.01g215500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAAGAATGTGGGGATTCTCGCCATTGACATCTACTTCCCTCCCGCTTGCGTTCAGCAGGAAGCATTGGAGACTCATGATGGTGCCAGTAAAGGGAAGTATACCATTGGACTTGGCCAAGACTGCATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATCGGTCGTCTGGAAGTTGGAAGCGAGACCGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTCGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTCTGTTTAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCCCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGTTTACGATTTTTACAAACCTAATCTTGCCAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTGTTGATTCTTGCTATAAGAATTTCTGTCACAAGTTTCAGAAATTCCAGGGAAAACAATTTTCTCTTTTTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGCTCGGTTGTTTTTCAATGACTTCTTGATGAATTCCAGCTCTGCGGATGAGGTTGCCAAAGAAAAACTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCTACTTGCAAAGCCTCTATATGATCAGAAGGTACAACCAACTACTTTGATTCCAAAGCAAGTTGGAAACATGTACACTGCGTCTCTTTATGCAGCATTTGCCTCCCTCATTCACAACAAACATAGCACATTGGCAGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTGCCACAATGTTTTCTTTGCAATTACGAGACAGTCAACATCCGTTTAGCTTGTCAAACATGGCTAGAGTGATGAATGTCGATGGAAAATTGAAGTCAAGACATGAGTTTCCCCCGGAGGAGTTTGTTGAAAACTTGAAGTTAATGGAGCATAGATATGGTGCGAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTTTATCTCCGGGCACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGATTCTATTCAAAGAAAACTAAAGAAAGCAGTTTGACTCACGCTGAGAACGGTGTGATTGCTAATGGCGTTGCTAATGGCCACTGA

>Glyma.01g215500.2 sequence-type=CDS polypeptide=Glyma.01g215500.2.p locus=Glyma.01g215500 ID=Glyma.01g215500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAAGAATGTGGGGATTCTCGCCATTGACATCTACTTCCCTCCCGCTTGCGTTCAGCAGGAAGCATTGGAGACTCATGATGGTGCCAGTAAAGGGAAGTATACCATTGGACTTGGCCAAGACTGCATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATCGGTCGTCTGGAAGTTGGAAGCGAGACCGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTCGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTCTGTTTAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCCCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGTTTACGATTTTTACAAACCTAATCTTGCCAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTGTTGATTCTTGCTATAAGAATTTCTGTCACAAGTTTCAGAAATTCCAGGGAAAACAATTTTCTCTTTTTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGCTCGGTTGTTTTTCAATGACTTCTTGATGAATTCCAGCTCTGCGGATGAGGTTGCCAAAGAAAAACTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCTACTTGCAAAGCCTCTATATGATCAGAAGGTACAACCAACTACTTTGATTCCAAAGCAAGTTGGAAACATGTACACTGCGTCTCTTTATGCAGCATTTGCCTCCCTCATTCACAACAAACATAGCACATTGGTGAATGTTCTGACCACTATCTATGATCAAGCTTCTTCACAACAATGTTTCGTGCTTTCTAATGAATATTTACATTTTTCAATTTTCAGGCAGGTAAGAGGGTGA

Predicted protein sequences of Glyma.01g215500

Limit To All Plant Sequences

>Glyma.01g215500.1.p sequence-type=predicted peptide transcript=Glyma.01g215500.1 locus=Glyma.01g215500 ID=Glyma.01g215500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKNFCHKFQKFQGKQFSLFDAEYFVFHSPYNKLVQKSFARLFFNDFLMNSSSADEVAKEKLGPFATLSGDESYQSRDLEKASQLLAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDSQHPFSLSNMARVMNVDGKLKSRHEFPPEEFVENLKLMEHRYGAKEFVTSKDSSLLSPGTFYLTEVDSMYRRFYSKKTKESSLTHAENGVIANGVANGH*

>Glyma.01g215500.2.p sequence-type=predicted peptide transcript=Glyma.01g215500.2 locus=Glyma.01g215500 ID=Glyma.01g215500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKNFCHKFQKFQGKQFSLFDAEYFVFHSPYNKLVQKSFARLFFNDFLMNSSSADEVAKEKLGPFATLSGDESYQSRDLEKASQLLAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLVNVLTTIYDQASSQQCFVLSNEYLHFSIFRQVRG*

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