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Report for Sequence Feature Glyma.01g208400

Feature Type:gene_model
Chromosome:Gm01
Start:54009810
stop:54015239
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51160.1AT SNARE-like superfamily protein JGI N/AIEA
GO:0006888GO-bp ER to Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0006888GO-bp ER to Golgi vesicle-mediated transport JGI N/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0065009GO-bp regulation of molecular function EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005801GO-cc cis-Golgi network JGI N/AIEA
GO:0030008GO-cc TRAPP complex EnsemblGenomesN/AIEA
GO:0017112GO-mf Rab guanyl-nucleotide exchange factor activity EnsemblGenomesN/AIEA
KOG3368 KOG Transport protein particle (TRAPP) complex subunit JGI N/AIEA
PTHR23249Panther SYNBINDIN JGI N/AIEA
PTHR23249:SF9Panther JGI N/AIEA
PF04099PFAM Sybindin-like family JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g208400 not represented in the dataset

Glyma.01g208400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.11g033800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma01g41690 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.01g208400.2 sequence-type=transcript locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGCAAGCCCAAAACATCAGTCATCTCCTTCACAGGAACCCTAAATCTGAAACTACCTTGACTCCGCTCAGCCACGGCTGAGAAAATAGCTCGTCTTCACGATCCAGCGATTCCGCTCTCCAACGGGACTGCGCAGGGTGAAGAATCGAGAGGCCAGCCGCCGGTGAAGAATCGCGCGATTCGTCTGGAAATCGCGATTCCAGCACGATTCATGCCCGATACAGAGATTTAACCACGATTCAGGAACAAAAACGAGACAACCTCCGATTCGTATTGGTAGCATCTGGAATCGTATCGAATCGTGCGATACGTATCCTGAATCGGTTTTGGTTTTTCTGTGAGTATCCCTGTTGATCAAGAATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAGAAGCTGAGTTGTTTCCATTCAACACTGTTGATGACCTGTGTGGTGTAACACCATGTTTTGTATGGTGGTCATACATTGTTAGTCAAAACTTTTAGGGAGttttctcaagtttgagctgtactttttcttgtcacagataacactagtgatactccattttatttgaatcctacaatttatgttgccctgtatttctcttccaatatatataataaactgaagatgcgtaaatcgtgtgacacgaatcacatgataagatatggtctccaatttttacctcaaagccaagattgatacgtctt

>Glyma.01g208400.1 sequence-type=CDS polypeptide=Glyma.01g208400.1.p locus=Glyma.01g208400 ID=Glyma.01g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAG

>Glyma.01g208400.2 sequence-type=CDS polypeptide=Glyma.01g208400.2.p locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAG

>Glyma.01g208400.1.p sequence-type=predicted peptide transcript=Glyma.01g208400.1 locus=Glyma.01g208400 ID=Glyma.01g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQFFGVSEISPSPPAPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLDAQQDHKLMFGLLFSLKSLTAKMDPTSAVEKGNLGMLQLPGQGCSFHSFCTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIRCELFNTTLDQYVRGIA*

>Glyma.01g208400.2.p sequence-type=predicted peptide transcript=Glyma.01g208400.2 locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQFFGVSEISPSPPAPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLDAQQDHKLMFGLLFSLKSLTAKMDPTSAVEKGNLGMLQLPGQGCSFHSFCTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIRCELFNTTLDQYVRGIA*







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