Glyma.01g208400

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Report for Sequence Feature Glyma.01g208400

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54009810
stop:	54015239
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g208400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51160.1	AT	SNARE-like superfamily protein	JGI	N/A	IEA
GO:0006888	GO-bp	ER to Golgi vesicle-mediated transport	EnsemblGenomes	N/A	IEA
GO:0006888	GO-bp	ER to Golgi vesicle-mediated transport	JGI	N/A	IEA
GO:0016192	GO-bp	vesicle-mediated transport	EnsemblGenomes	N/A	IEA
GO:0065009	GO-bp	regulation of molecular function	EnsemblGenomes	N/A	IEA
GO:0005622	GO-cc	intracellular	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005801	GO-cc	cis-Golgi network	JGI	N/A	IEA
GO:0030008	GO-cc	TRAPP complex	EnsemblGenomes	N/A	IEA
GO:0017112	GO-mf	Rab guanyl-nucleotide exchange factor activity	EnsemblGenomes	N/A	IEA
KOG3368	KOG	Transport protein particle (TRAPP) complex subunit	JGI	N/A	IEA
PTHR23249	Panther	SYNBINDIN	JGI	N/A	IEA
PTHR23249:SF9	Panther		JGI	N/A	IEA
PF04099	PFAM	Sybindin-like family	JGI	N/A	IEA

Expression Patterns of Glyma.01g208400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g208400 not represented in the dataset	Glyma.01g208400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01g208400

Paralog	Evidence	Comments
Glyma.11g033800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g208400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g41690	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g208400

Limit To All Plant Sequences

>Glyma.01g208400.2 sequence-type=transcript locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGCAAGCCCAAAACATCAGTCATCTCCTTCACAGGAACCCTAAATCTGAAACTACCTTGACTCCGCTCAGCCACGGCTGAGAAAATAGCTCGTCTTCACGATCCAGCGATTCCGCTCTCCAACGGGACTGCGCAGGGTGAAGAATCGAGAGGCCAGCCGCCGGTGAAGAATCGCGCGATTCGTCTGGAAATCGCGATTCCAGCACGATTCATGCCCGATACAGAGATTTAACCACGATTCAGGAACAAAAACGAGACAACCTCCGATTCGTATTGGTAGCATCTGGAATCGTATCGAATCGTGCGATACGTATCCTGAATCGGTTTTGGTTTTTCTGTGAGTATCCCTGTTGATCAAGAATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAGAAGCTGAGTTGTTTCCATTCAACACTGTTGATGACCTGTGTGGTGTAACACCATGTTTTGTATGGTGGTCATACATTGTTAGTCAAAACTTTTAGGGAGttttctcaagtttgagctgtactttttcttgtcacagataacactagtgatactccattttatttgaatcctacaatttatgttgccctgtatttctcttccaatatatataataaactgaagatgcgtaaatcgtgtgacacgaatcacatgataagatatggtctccaatttttacctcaaagccaagattgatacgtctt

Coding sequences of Glyma.01g208400

Limit To All Plant Sequences

>Glyma.01g208400.1 sequence-type=CDS polypeptide=Glyma.01g208400.1.p locus=Glyma.01g208400 ID=Glyma.01g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAG

>Glyma.01g208400.2 sequence-type=CDS polypeptide=Glyma.01g208400.2.p locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAG

Predicted protein sequences of Glyma.01g208400

Limit To All Plant Sequences

>Glyma.01g208400.1.p sequence-type=predicted peptide transcript=Glyma.01g208400.1 locus=Glyma.01g208400 ID=Glyma.01g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQFFGVSEISPSPPAPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLDAQQDHKLMFGLLFSLKSLTAKMDPTSAVEKGNLGMLQLPGQGCSFHSFCTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIRCELFNTTLDQYVRGIA*

>Glyma.01g208400.2.p sequence-type=predicted peptide transcript=Glyma.01g208400.2 locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQFFGVSEISPSPPAPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLDAQQDHKLMFGLLFSLKSLTAKMDPTSAVEKGNLGMLQLPGQGCSFHSFCTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIRCELFNTTLDQYVRGIA*

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