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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G51160.1 | AT | SNARE-like superfamily protein | JGI | N/A | IEA |
GO:0006888 | GO-bp | ER to Golgi vesicle-mediated transport | EnsemblGenomes | N/A | IEA |
GO:0006888 | GO-bp | ER to Golgi vesicle-mediated transport | JGI | N/A | IEA |
GO:0016192 | GO-bp | vesicle-mediated transport | EnsemblGenomes | N/A | IEA |
GO:0065009 | GO-bp | regulation of molecular function | EnsemblGenomes | N/A | IEA |
GO:0005622 | GO-cc | intracellular | JGI | N/A | IEA |
GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
GO:0005801 | GO-cc | cis-Golgi network | JGI | N/A | IEA |
GO:0030008 | GO-cc | TRAPP complex | EnsemblGenomes | N/A | IEA |
GO:0017112 | GO-mf | Rab guanyl-nucleotide exchange factor activity | EnsemblGenomes | N/A | IEA |
KOG3368 | KOG | Transport protein particle (TRAPP) complex subunit | JGI | N/A | IEA |
PTHR23249 | Panther | SYNBINDIN | JGI | N/A | IEA |
PTHR23249:SF9 | Panther | JGI | N/A | IEA | |
PF04099 | PFAM | Sybindin-like family | JGI | N/A | IEA |
Glyma.01g208400 not represented in the dataset |
Glyma.01g208400 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.11g033800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma01g41690 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g208400.2 sequence-type=transcript locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CGCAAGCCCAAAACATCAGTCATCTCCTTCACAGGAACCCTAAATCTGAAACTACCTTGACTCCGCTCAGCCACGGCTGAGAAAATAGCTCGTCTTCACGATCCAGCGATTCCGCTCTCCAACGGGACTGCGCAGGGTGAAGAATCGAGAGGCCAGCCGCCGGTGAAGAATCGCGCGATTCGTCTGGAAATCGCGATTCCAGCACGATTCATGCCCGATACAGAGATTTAACCACGATTCAGGAACAAAAACGAGACAACCTCCGATTCGTATTGGTAGCATCTGGAATCGTATCGAATCGTGCGATACGTATCCTGAATCGGTTTTGGTTTTTCTGTGAGTATCCCTGTTGATCAAGAATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAGAAGCTGAGTTGTTTCCATTCAACACTGTTGATGACCTGTGTGGTGTAACACCATGTTTTGTATGGTGGTCATACATTGTTAGTCAAAACTTTTAGGGAGttttctcaagtttgagctgtactttttcttgtcacagataacactagtgatactccattttatttgaatcctacaatttatgttgccctgtatttctcttccaatatatataataaactgaagatgcgtaaatcgtgtgacacgaatcacatgataagatatggtctccaatttttacctcaaagccaagattgatacgtctt
>Glyma.01g208400.1 sequence-type=CDS polypeptide=Glyma.01g208400.1.p locus=Glyma.01g208400 ID=Glyma.01g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAG >Glyma.01g208400.2 sequence-type=CDS polypeptide=Glyma.01g208400.2.p locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAATTCTTTGGGGTGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCATCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCATAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCTTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCTGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTCGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCACCTATTAGGTGCGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTGCATAG
>Glyma.01g208400.1.p sequence-type=predicted peptide transcript=Glyma.01g208400.1 locus=Glyma.01g208400 ID=Glyma.01g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQFFGVSEISPSPPAPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLDAQQDHKLMFGLLFSLKSLTAKMDPTSAVEKGNLGMLQLPGQGCSFHSFCTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIRCELFNTTLDQYVRGIA* >Glyma.01g208400.2.p sequence-type=predicted peptide transcript=Glyma.01g208400.2 locus=Glyma.01g208400 ID=Glyma.01g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQFFGVSEISPSPPAPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLDAQQDHKLMFGLLFSLKSLTAKMDPTSAVEKGNLGMLQLPGQGCSFHSFCTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIRCELFNTTLDQYVRGIA*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||