Glyma.01g208000

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Report for Sequence Feature Glyma.01g208000

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53984804
stop:	53987235
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g208000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17360.1	AT	Formyl transferase	JGI	N/A	IEA
GO:0006189	GO-bp	'de novo' IMP biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	JGI	N/A	IEA
GO:0008864	GO-mf	formyltetrahydrofolate deformylase activity	EnsemblGenomes	N/A	IEA
GO:0016742	GO-mf	hydroxymethyl-, formyl- and related transferase activity	EnsemblGenomes	N/A	IEA
GO:0016742	GO-mf	hydroxymethyl-, formyl- and related transferase activity	JGI	N/A	IEA
KOG3076	KOG	5'-phosphoribosylglycinamide formyltransferase	JGI	N/A	IEA
PTHR10520	Panther	TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED	JGI	N/A	IEA
PTHR10520:SF7	Panther	FORMYL TRANSFERASE-RELATED	JGI	N/A	IEA
PF00551	PFAM	Formyl transferase	JGI	N/A	IEA
PWY-7909	SoyCyc9	formaldehyde oxidation VII (THF pathway)	Plant Metabolic Network		ISS
GN7V-48596	SoyCyc9-rxn	formyltetrahydrofolate deformylase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.01g208000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g208000 not represented in the dataset	Glyma.01g208000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01g208000

Paralog	Evidence	Comments
Glyma.11g034300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g208000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g41650	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g208000

Limit To All Plant Sequences

>Glyma.01g208000.2 sequence-type=transcript locus=Glyma.01g208000 ID=Glyma.01g208000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAATTTTGAGATAGCCAAATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACaacagcagagaataaaagagaagaggagaTCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGAGGACAAACAACAATTATACACTCTGCCAAATGGGGGTATATCTCTATAAGTGCATATGATTATTTACTTCAAAAGCCCACGCTATGCTTATATTTGGATAAACTTATCAATAATTACTTTAAAAAAAAGTTGTTAAAATGAATTAAAATGGGGCAT

Coding sequences of Glyma.01g208000

Limit To All Plant Sequences

>Glyma.01g208000.1 sequence-type=CDS polypeptide=Glyma.01g208000.1.p locus=Glyma.01g208000 ID=Glyma.01g208000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGACCACTGTCTGATTGATTTGTTACATGGATGGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGA

>Glyma.01g208000.2 sequence-type=CDS polypeptide=Glyma.01g208000.2.p locus=Glyma.01g208000 ID=Glyma.01g208000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGA

Predicted protein sequences of Glyma.01g208000

Limit To All Plant Sequences

>Glyma.01g208000.1.p sequence-type=predicted peptide transcript=Glyma.01g208000.1 locus=Glyma.01g208000 ID=Glyma.01g208000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKMGIVQRLCSSWSNVFRLGNRNSYSSFNKSVDPTNPSCSSSSFLTHGIHVFQCPDAVGIVANLSDCIASRGGNILSADVFVPQNKRVFYSRNVFVFDPVMWPRMQMEEDFLRISKTFNAMRSVIRVPALDPKYKIAILVAKQDHCLIDLLHGWQDGRLSVDITCVISNHYRSPENEVIRFLDMHGVPYHYLRTTAENKREEEILELVQNTDFLVLARSMRILSSFFLRSYGKDIINIHHGLLPSFSGSNPSKQAVDAGVKLIGATSHFVTEGLDAGPIIEQMVERVSHRDNLQSYVQKSENLEKQCLTSAIRSYCELRVLPYEKKNTVVF*

>Glyma.01g208000.2.p sequence-type=predicted peptide transcript=Glyma.01g208000.2 locus=Glyma.01g208000 ID=Glyma.01g208000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKMGIVQRLCSSWSNVFRLGNRNSYSSFNKSVDPTNPSCSSSSFLTHGIHVFQCPDAVGIVANLSDCIASRGGNILSADVFVPQNKRVFYSRNVFVFDPVMWPRMQMEEDFLRISKTFNAMRSVIRVPALDPKYKIAILVAKQDGRLSVDITCVISNHYRSPENEVIRFLDMHGVPYHYLRTTAENKREEEILELVQNTDFLVLARSMRILSSFFLRSYGKDIINIHHGLLPSFSGSNPSKQAVDAGVKLIGATSHFVTEGLDAGPIIEQMVERVSHRDNLQSYVQKSENLEKQCLTSAIRSYCELRVLPYEKKNTVVF*

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