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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16700.1 | AT | phosphatidylserine decarboxylase 1 | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006646 | GO-bp | phosphatidylethanolamine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008654 | GO-bp | phospholipid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008654 | GO-bp | phospholipid biosynthetic process | JGI | N/A | IEA |
| GO:0016540 | GO-bp | protein autoprocessing | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0031305 | GO-cc | integral component of mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0004609 | GO-mf | phosphatidylserine decarboxylase activity | EnsemblGenomes | N/A | IEA |
| GO:0004609 | GO-mf | phosphatidylserine decarboxylase activity | JGI | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0016831 | GO-mf | carboxy-lyase activity | EnsemblGenomes | N/A | IEA |
| KOG2420 | KOG | Phosphatidylserine decarboxylase | JGI | N/A | IEA |
| PTHR10067 | Panther | PHOSPHATIDYLSERINE DECARBOXYLASE | JGI | N/A | IEA |
| PF02666 | PFAM | Phosphatidylserine decarboxylase | JGI | N/A | IEA |
| PHOSLIPSYN2-PWY | SoyCyc9 | superpathway of phospholipid biosynthesis II (plants) | Plant Metabolic Network | ISS | |
| PWY-5669 | SoyCyc9 | phosphatidylethanolamine biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-63770 | SoyCyc9-rxn | phosphatidylserine decarboxylase | Plant Metabolic Network | ISS |
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Glyma.01g207800 not represented in the dataset |
Glyma.01g207800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g41630 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g207800.1 sequence-type=CDS polypeptide=Glyma.01g207800.1.p locus=Glyma.01g207800 ID=Glyma.01g207800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAATATAGGGTTTCGCACAAGTTCCCTGTGCTTCCTCGCCACACTCGTCCCTTTAACCACACTCGCTACTTCACTTCCTTCGCCAAGAAGTTCCAAACACCTCAACCTCGGGCTTCTATCAATGCCGGAGGAAGTGGAAATTCTCAAGGGAATTCTTTTGTTGTACCTGGAGCAACAGTTGCTACCATACTTATGCTTGGTGTTCTCCATGCCCGCCGACTCTACGAGGACAAGAAGACTGAACAGATGAAGGAGAAGGGAATCGAAATAGAATTCCAACCTGATGCAAAGGCTACATTTTTGAGATTACTGCCTCTGCGTTCAATTTCTAGATGTTGGGGATACTTGACAAGCATGGAAATACCTGTTTGGCTAAGGCCCCATATCTATAAAGCGTGGGCTCGAGCATTCCATTCAAATTTAGAAGAAGCTGCTTTACCTCTAGACAAATATGCCTCTTTAAGGGATTTTTTTGTTCGCACTTTGAAAGAAGGTTCCAGGCCTATTGATGTTGATCCACAGTGTCTGGTTAGTCCTGTGGACGGTACAGTTTTAAGATTTGGGGAGTTGAAGGGAGCTGGAGCAATGATTGAACAAATTAAAGGGTTTTCATATTCAGTTTTTTCTCTTCTTGGTGCAAGCCCTTTCCTTCCAACAACAGATGTGCAAGAGGAGCATAGTGAATCAATAACAACTACTGTGAAGAGCAAGAAGTCATGGTGGAGAGTTTCATTGGCTTCTCCAAAAGTGTGGAACCCAACATCATCACGCCCAAAGAAAGGCCTTTTTTACTGTGTGGTTTACTTGAAGCCTGGAGATTACCATCGGATACACTCCCCAGCTGATTGGAACATTCTTGCACGCAGGCATTTTTCTGGTCGTCTTTATCCCTTGAATGAACGTGCTACAAGAACAATTAGAAACCTCTATATTGAGAACGAGAGGGTTATTCTTGAAGGTCTATGGCAGGAAGGGTTTATGGCACTTGCTGCAATTGGTGCCACAAATATTGGGTCAATTGAGCTTTTCATTGAGCCCGAACTTCATACAAACAGGCCAAGGAAGAAGTTTCTTCATTCAGAGCCTCCTGAAGAACGGATTTATGGATGTGAAGGTGTAGGCAGAATGCTCAAGAAAGGGGATGAGTTAGGTGCTTTCAACATGGGATCAACAGTTGTGCTTGTTTTCCAAGCCCCAATTTCAAAACTCCCTGAGGGCGATTCATCTCAAGAGTTCAGGTTCTGCGTCGGCCGTGGGGATAGAATTCGTGTTGGTGAGGCTCTAGGAAGGTGGCATAGTTCGTGA
>Glyma.01g207800.1.p sequence-type=predicted peptide transcript=Glyma.01g207800.1 locus=Glyma.01g207800 ID=Glyma.01g207800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKYRVSHKFPVLPRHTRPFNHTRYFTSFAKKFQTPQPRASINAGGSGNSQGNSFVVPGATVATILMLGVLHARRLYEDKKTEQMKEKGIEIEFQPDAKATFLRLLPLRSISRCWGYLTSMEIPVWLRPHIYKAWARAFHSNLEEAALPLDKYASLRDFFVRTLKEGSRPIDVDPQCLVSPVDGTVLRFGELKGAGAMIEQIKGFSYSVFSLLGASPFLPTTDVQEEHSESITTTVKSKKSWWRVSLASPKVWNPTSSRPKKGLFYCVVYLKPGDYHRIHSPADWNILARRHFSGRLYPLNERATRTIRNLYIENERVILEGLWQEGFMALAAIGATNIGSIELFIEPELHTNRPRKKFLHSEPPEERIYGCEGVGRMLKKGDELGAFNMGSTVVLVFQAPISKLPEGDSSQEFRFCVGRGDRIRVGEALGRWHSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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