Report for Sequence Feature Glyma.01g204400
Feature Type: gene_model
Chromosome: Gm01
Start: 53722328
stop: 53724096
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.01g204400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G74950.1 AT
TIFY domain/Divergent CCT motif family protein
JGI N/A IEA
GO:0009611 GO-bp
response to wounding
EnsemblGenomes N/A IEA
GO:0031347 GO-bp
regulation of defense response
EnsemblGenomes N/A IEA
GO:1903507 GO-bp
negative regulation of nucleic acid-templated transcription
EnsemblGenomes N/A IEA
GO:2000022 GO-bp
regulation of jasmonic acid mediated signaling pathway
EnsemblGenomes N/A IEA
GO:0005634 GO-cc
nucleus
EnsemblGenomes N/A IEA
GO:0003714 GO-mf
transcription corepressor activity
EnsemblGenomes N/A IEA
PF06200 PFAM
tify domain
JGI N/A IEA
PF09425 PFAM
Divergent CCT motif
JGI N/A IEA
Expression Patterns of Glyma.01g204400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.01g204400
Paralog Evidence Comments
Glyma.11g038600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.01g204400 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma01g41290 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.01g204400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.01g204400.2 sequence-type=transcript locus=Glyma.01g204400 ID=Glyma.01g204400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGATAAGGTTCAATAATCGATATCATATCATCACATCTTCTGCTCTCTCACGAGAAGAATACTACTAACTGTGTTGTAATACCTCAGTGGAGAACAAGATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAACTTGCTTATCCTCCTTATCGCTTGGTAGAAGAGATTCCAAACATGGGAAATTCCAGTTGTGTGAGCAAGGAGCCAAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTCTTGTCTTGGATGATATTCAAGCTGACAAAGCCAAGGACATCATGTCTTTTGCCGGCAAAGGAATGTCTCAAAACCAGAACGACTGTGCTTACACTTTCCCTGCTACAACTTCTGCTACTCCCAGTAGACCATTCCCTTTTCTTATGAATATCATTCCAACCACTGCCAATAATTCGGTTCAAGACCACCCTCAAACACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGGTAAGTAGGCTGAGTCATGGAAATTAATACATCAACGAAAGTATACCTTCAAGTTTTCTTCAAAATTGGTTTTAGACCCTACATCCTAAAAACAATGATTTTGACCTTTGTATTTTCTAAAGTGTGGTGGATTTGGTATTTGGTATCTGCTTATGTCAAAATGAAGTACAGGGTCAAGTACAAAATCTACCACATTTCAGAACTACGAAAGCTAAAATTATCATTAATAAAAAAAATTAGGATTTAAACCTAATTTGGACTGAATATATGTTGAGTAACCTAAAATGCATTTTACCTTCTTTTTTAATTTACTGCTTTGGATCAAATCATTTATATATTATTATTAATGTTTGTGCAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCTAGCTGAATCCAAGCCATGGCTCACCTTGGCACCTAAATCACCACAACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAACTACTTTTGTTGGACAAGGTGAAGAAGAATTGTGGTGTCAACATTTTGATAAACGGAGTCAACATTTTATGGGCTTCTCTATAGCTCCGTGCTGAATTTTTGGGAGGGCTATGATCAATGCTGTTGCTCATGGCTTTACTATTATTATATTTAAGAGTGTAATTTAGGGCAAAAAAGTAATGTAAATGTAGTTTGGTTAGCATAGTTTTAGTAAAATATTGAAATCAGTTCTTCTCAATTCTCATTATCACGTGTATTATATGTAAAACTTCGGTTAGGATTATCTTTCTATATGCTAGCCTGTTTGTTATGGTTCAATTGGTTTCCTACTAGTATGTGAGACACATTTAGTCAAATTCCATCTTTCCAGCGAATTCAGTTTTTCCTCTCAAATTATCCTAGTTCATGCCATGCAGCAGAAAATGAGGTAGATTGAGCAGCAATAAGAATAACAAATTGAACTAATTGAAAGATATAATGTGCATGCAATTATTATGTAGCATTGTTATAAAAATATtgttgaatcct
Coding sequences of Glyma.01g204400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.01g204400.1 sequence-type=CDS polypeptide=Glyma.01g204400.1.p locus=Glyma.01g204400 ID=Glyma.01g204400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAACTTGCTTATCCTCCTTATCGCTTGGTAGAAGAGATTCCAAACATGGGAAATTCCAGTTGTGTGAGCAAGGAGCCAAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTCTTGTCTTGGATGATATTCAAGCTGACAAAGCCAAGGACATCATGTCTTTTGCCGGCAAAGGAATGTCTCAAAACCAGAACGACTGTGCTTACACTTTCCCTGCTACAACTTCTGCTACTCCCAGTAGACCATTCCCTTTTCTTATGAATATCATTCCAACCACTGCCAATAATTCGGTTCAAGACCACCCTCAAACACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCTAGCTGAATCCAAGCCATGGCTCACCTTGGCACCTAAATCACCACAACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA
>Glyma.01g204400.2 sequence-type=CDS polypeptide=Glyma.01g204400.2.p locus=Glyma.01g204400 ID=Glyma.01g204400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAACTTGCTTATCCTCCTTATCGCTTGGTAGAAGAGATTCCAAACATGGGAAATTCCAGTTGTGTGAGCAAGGAGCCAAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTCTTGTCTTGGATGATATTCAAGCTGACAAAGCCAAGGACATCATGTCTTTTGCCGGCAAAGGAATGTCTCAAAACCAGAACGACTGTGCTTACACTTTCCCTGCTACAACTTCTGCTACTCCCAGTAGACCATTCCCTTTTCTTATGAATATCATTCCAACCACTGCCAATAATTCGGTTCAAGACCACCCTCAAACACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGGTAA
Predicted protein sequences of Glyma.01g204400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.01g204400.1.p sequence-type=predicted peptide transcript=Glyma.01g204400.1 locus=Glyma.01g204400 ID=Glyma.01g204400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNPWNMRTSKLLSQQLAYPPYRLVEEIPNMGNSSCVSKEPRGSQMTIFYGGQVLVLDDIQADKAKDIMSFAGKGMSQNQNDCAYTFPATTSATPSRPFPFLMNIIPTTANNSVQDHPQTPSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKLAESKPWLTLAPKSPQQDESDSDSSSSFVLF*
>Glyma.01g204400.2.p sequence-type=predicted peptide transcript=Glyma.01g204400.2 locus=Glyma.01g204400 ID=Glyma.01g204400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNPWNMRTSKLLSQQLAYPPYRLVEEIPNMGNSSCVSKEPRGSQMTIFYGGQVLVLDDIQADKAKDIMSFAGKGMSQNQNDCAYTFPATTSATPSRPFPFLMNIIPTTANNSVQDHPQTPSKPVICDLPLARKASLHRFLEKRKDR*