SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.01g202600

Feature Type:gene_model
Chromosome:Gm01
Start:54644822
stop:54658329
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.01g202600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47010.1AT ATUPF1,LBA1,UPF1 JGI N/AIEA
3.6.4.12EC DNA helicase JGI N/AIEA
GO:0000184GO-bp nuclear-transcribed mRNA catabolic process, nonsense-mediated decay JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
K14326KEGG Messenger RNA biogenesis JGI N/AIEA
PTHR10887PantherFam DNA2/NAM7 HELICASE FAMILY JGI N/AIEA
PF09416Pfam RNA helicase (UPF2 interacting domain) JGI N/AIEA
PF13086Pfam AAA domain JGI N/AIEA

Gene model name correspondences to Glyma.01g202600 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g41110 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g202600
>Glyma.01g202600.1 sequence-type=CDS polypeptide=Glyma.01g202600.1.p locus=Glyma.01g202600 id=Glyma.01g202600.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGACTCGCAGCAGAACAATCTATTCGAGACCGCTTCGCAACCCGACACCGGCAACGACGCCTACACCTTCCTTGAATTCAACACGCAGGGCGAGGATTTCGACTACCCCGAGTTCCGCGACCCGATTAGGTCGCCGGTGGCCTGGCCCACGCCGTCCGATTCGCTAGCGGACCCGTTGGAGCGCGGCGGCGGAGGCGGTTCTGATCACCAGTCTGATGCCTCGCCGGTTTCCGTGGCTCCCGGGAGTGCCACGAAGGGGGGCCGGTCGGGGAGCGGCGGCGGGAACAGCAGCCAGATGGTGGATGCGCTTGCGGCGGGGATGAGCGGGTTGAATTTCGAGGACACTGGGGATGACGATAACTATGAGTATGGGAAAGGGGATTTCACCGAACACGCTTGCCGCTATTGTGGGGTTTCCAATCCCGCGTGTGTTGTGAGGTGCAATGTGCCTTCGTGTAGAAAGTGGTTCTGTAATTCTCGAGGGAACACTTCGGGATCGCATATCGTCAATCACCTGGTTCGGGCTAAACACAAGGAAGTCTGCCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTCGAATGCTACAACTGTGGATGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCAAAGACGGAAAGTGTAGTGGTTCTTCTTTGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCTCGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCCGTTGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTCACTATCCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTATTTCCAAAGGAAGATAATGAGTTGCGGCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAGTCAGGGGGTTCCAGTTGATGTTAACCATGGTTTCAGTGTTGACTTTGTCTGGAAAAGTACAAGTTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTACCATCACTTATTGGGTCACGAAGTTGAGGTTCAAATGGTGCGTAATGCCCTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCAGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTTCTTCAAAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACCGTAACATCTGCAGCACTTGTATACCACATGGCCAAGCAAGGTCAAGGGCAGGTTTTGGTTTGTGCACCCAGTAACGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACATCAGACAAGAGTGAACTTCATAAGTTACAACAGCTGAAGGATGAGCAAGGCGAACTTTCTAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAAAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCCACTCAAGCAACTGAACCTGAGTGCCTCATACCCTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCCCGTGCTGGGTTAGCACAGTCACTTTTTGAACGCCTAGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGTTTCTATGAAGGCACTCTGCAAAATGGAGTCACTGTTAATGAAAGGAAGTCTTCTGGAATTGATTTTCCTTGGCCAGTGCCAAACCGTCCCATGTTTTTCTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACCGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTACCAAGTCAGATTGGTGTGATAACACCTTATGAGGGGCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGCGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGATTTCTGAATGATCCTAGGAGGCTCAATGTTGCTTTGACACGAGCAAGATATGGCATTGTTATTTTGGGAAACCCTAAAGTTTTGAGCAAACAGCCTCTATGGAATAGTTTATTGACTCACTACAAGGAACATGAGTGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAAAGTATGGTTCAGTTCCAGAAACCCAAGAAGATTTACAATGAACGAAGGCTTTTTTATGGGGGTGGACCTGGAATTGCGGCTAATGATAATTTTGGTAGTGTTGGATCTGGAGCTGGCACAAGTTCAGATCGGAGGAGCAGTCGAGGAAGGGGATCTTATATACCTCCTGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTGTGCCAAGGGTTCCTTTGCCTCCTTTTCATGGTGGTCCCCAATCTCAACCATATGCCATTCCATCTCGCGGGGCAGTTCATGGACCCGTTGGGGCAGTTCCTCATGTTCCATCTCCAGGGAGTCGAGGTTTTGGGGCTGGGAGAGGTAATTCTGGTGCTCCAATCGGCAATCATCTACCACATCAACAAGGCACCCAACAGCCTATTGGGAATATTGGATCTACATTTAACTTCCCTGCTCTAGAGAATCCCAACAGCCAGCCATCTGTTGGTGGTCCATCATCTCAACCTGGGTTTGCCAACAATATGCCTGTTCAAGGTGCTGGCCAATCATTTCGAGATCAATTTTCTATGCCTGGAATGTCCCAGGACTTCTTGGGCGATGACTTCAAAAGCCAGGGGTCTCATGTTCCTTATAATGTCACTGATTTCTCTACACAGGCTTCTCAAAGTGGATATGCTGTCGATTATGCTACACAAGGAGCACAAGGTGGATTCTCAGGGAATTTTCTTAACCAGAATTCTCAAGCTGGATATTCTCGCTTTGGTTCTGGAAATGACTTTATGTCTCAGGACTACATGGGCCATGGATCACAAGGTCTTTTCACTCAGGTGGGATTCACTGATCCCTTGCAAGATGATGCAACGCAAAGCCATTTCAGTGTGGCAAATGCCAACCCTCTTCAGTCCCAGATGAGTTCTCTTTACTCCCAACCTTTTGCTCACTACAACACACAGCCGCTTAACATGCAGGCTACCCAACAGCAGCCTCAGGCTCAGAACTCCCAAAATCAGAAAATCCACTATAACGGTTGA
Predicted protein sequences of Glyma.01g202600
>Glyma.01g202600.1.p sequence-type=predicted peptide transcript=Glyma.01g202600.1 locus=Glyma.01g202600 id=Glyma.01g202600.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPLERGGGGGSDHQSDASPVSVAPGSATKGGRSGSGGGNSSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERKSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGSVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFPALENPNSQPSVGGPSSQPGFANNMPVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFSGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFTDPLQDDATQSHFSVANANPLQSQMSSLYSQPFAHYNTQPLNMQATQQQPQAQNSQNQKIHYNG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo