Glyma.01g202000

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Report for Sequence Feature Glyma.01g202000

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53495131
stop:	53498288
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g202000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38740.1	AT	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
KOG2914	KOG	Predicted haloacid-halidohydrolase and related hydrolases	JGI	N/A	IEA
PTHR18901	Panther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	JGI	N/A	IEA
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI	N/A	IEA
GN7V-66632	SoyCyc9-rxn	sugar-terminal-phosphatase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.01g202000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g202000 not represented in the dataset	Glyma.01g202000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01g202000

Paralog	Evidence	Comments
Glyma.11g040800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g202000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g41030	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g202000

Limit To All Plant Sequences

>Glyma.01g202000.2 sequence-type=transcript locus=Glyma.01g202000 ID=Glyma.01g202000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
tGGCATATTCCATTAGATTAGCATAACATGCTCAAGTGActctcgctctctttctctgtttcacgctcatctttctctgtttcacgctcatctttcagtttcactAACAATGACAGTTTCTTCTGAGAATGGCGTCTCAAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGTCTGCATTTTTGTAATGCCTTCTTGAAGAATAATTTGTTCTGTATCTGCTTTTGACACAACATTTCTTCTTTGGTTATAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCTGTTATTGGTTTAGCTACTCGAAACCCAGAAAATTTATTGATGGAAGCAAAACCTGCCTTTCTGATTAAGGATTATGAGGATCCAAAATTGTGGGCAGCTTTGGAAGAACTTGACAAGGCTACCAGTGCTCGTTCAGTTTGAATTACTAGTGCAACTGACAGAATTTTCTGATAAAAACAAATAGCGGGATTCACGTTAAATTCAGAGGTTCGCCTGCATAATTTTGTTGTAGGTGGCCACATTATACTACTAGTGCATAATTAGTGTTGCTTTGCAACCGAGAGCAGACAGTTATATTCTATTTATGTTTTGTAATAATGTCATTATCAGTATGAACTCGCGGGTTAAGCCAAGCAGATTGCTGAGCCCAAGTGATATTGTTTACACTTGACAGAATCAAAATATAAAATCTATCACAAATAATTTACAATATATATTGTTT

>Glyma.01g202000.3 sequence-type=transcript locus=Glyma.01g202000 ID=Glyma.01g202000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAGTTAAATTTCAGGATAAGGGAAGGTACTTCAGTGTATCATCTATGTTTTAAATAAAAAGGACTCTTGCGGGGACACGTTACTTAGACATATAAACCATTTATGTGCCTTACGCTATGGCTTATGCTTTTGGTATAGTTGGCTACTGGGTTCTTGACATGCTTCGTGATAGAAATTTTAGTTTATAGGCATATCCTACTTTATCATTCACAGTCAACTTGTACTTGTCACTCATTACTTTCTTGTTGTGTCAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCTGTTATTGGTTTAGCTACTCGAAACCCAGAAAATTTATTGATGGAAGCAAAACCTGCCTTTCTGATTAAGGATTATGAGGATCCAAAATTGTGGGCAGCTTTGGAAGAACTTGACAAGGCTACCAGTGCTCGTTCAGTTTGAATTACTAGTGCAACTGACAGAATTTTCTGATAAAAACAAATAGCGGGATTCACGTTAAATTCAGAGGTTCGCCTGCATAATTTTGTTGTAGGTGGCCACATTATACTACTAGTGCATAATTAGTGTTGCTTTGCAACCGAGAGCAGACAGTTATATTCTATTTATGTTTTGTAATAATGTCATTATCAGTATGAACTCGCGGGTTAAGCCAAGCAGATTGCTGAGCCCAAGTGATATTGTTTACACTTGACAGAATCAAAATATAAAATCTATCACAAATAATTTACAATATATATTGTTT

Coding sequences of Glyma.01g202000

Limit To All Plant Sequences

>Glyma.01g202000.1 sequence-type=CDS polypeptide=Glyma.01g202000.1.p locus=Glyma.01g202000 ID=Glyma.01g202000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGTTTCTTCTGAGAATGGCGTCTCAAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCTGTTATTGGTTTAGCTACTCGAAACCCAGAAAATTTATTGATGGAAGCAAAACCTGCCTTTCTGATTAAGGATTATGAGGATCCAAAATTGTGGGCAGCTTTGGAAGAACTTGACAAGGCTACCAGTGCTCGTTCAGTTTGA

>Glyma.01g202000.2 sequence-type=CDS polypeptide=Glyma.01g202000.2.p locus=Glyma.01g202000 ID=Glyma.01g202000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGTTTCTTCTGAGAATGGCGTCTCAAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGTCTGCATTTTTGTAATGCCTTCTTGA

>Glyma.01g202000.3 sequence-type=CDS polypeptide=Glyma.01g202000.3.p locus=Glyma.01g202000 ID=Glyma.01g202000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCTGTTATTGGTTTAGCTACTCGAAACCCAGAAAATTTATTGATGGAAGCAAAACCTGCCTTTCTGATTAAGGATTATGAGGATCCAAAATTGTGGGCAGCTTTGGAAGAACTTGACAAGGCTACCAGTGCTCGTTCAGTTTGA

Predicted protein sequences of Glyma.01g202000

Limit To All Plant Sequences

>Glyma.01g202000.1.p sequence-type=predicted peptide transcript=Glyma.01g202000.1 locus=Glyma.01g202000 ID=Glyma.01g202000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTVSSENGVSSGQSSLTGLAPLEAVLFDIDGTLCDSDPLHYYAFREMLLEIGFNGGVPISEEFFIDTVAGKHNDDIALVLFPGDLERGLKFVDDKEAMFRRLAAEQLKPLNGLDKVRKWIENHGLKRAAVTNAPRANAELMISILGLSDFFDAVIIGGECEHAKPHPDPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGLATRNPENLLMEAKPAFLIKDYEDPKLWAALEELDKATSARSV*

>Glyma.01g202000.2.p sequence-type=predicted peptide transcript=Glyma.01g202000.2 locus=Glyma.01g202000 ID=Glyma.01g202000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTVSSENGVSSGQSSLTGLAPLEAVLFDIDGTLCDSDPLHYYAFREMLLEIGFNGGVPISEEFFIDTVAGKHNDDIALVLFPGDLERGLKFVDDKEAMFRRLAAEQLKPLNGLDKVRKWIENHGLKRAAVTNAPRANAELMISILGLSDFFDAVIIGGECEHAKPHPDPYLKGLEALKASKDHTFVFEVCIFVMPS*

>Glyma.01g202000.3.p sequence-type=predicted peptide transcript=Glyma.01g202000.3 locus=Glyma.01g202000 ID=Glyma.01g202000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLEIGFNGGVPISEEFFIDTVAGKHNDDIALVLFPGDLERGLKFVDDKEAMFRRLAAEQLKPLNGLDKVRKWIENHGLKRAAVTNAPRANAELMISILGLSDFFDAVIIGGECEHAKPHPDPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGLATRNPENLLMEAKPAFLIKDYEDPKLWAALEELDKATSARSV*

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