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Report for Sequence Feature Glyma.01g201600

Feature Type:gene_model
Chromosome:Gm01
Start:53487870
stop:53488991
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g201600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATCG00360.1AT Tetratricopeptide repeat (TPR)-like superfamily protein JGI N/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009535GO-cc chloroplast thylakoid membrane EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0009579GO-cc thylakoid EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR26312Panther FAMILY NOT NAMED JGI N/AIEA
PTHR26312:SF22Panther JGI N/AIEA
PF00515PFAM Tetratricopeptide repeat JGI N/AIEA

Expression Patterns of Glyma.01g201600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g201600 not represented in the dataset
Glyma.01g201600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01g201600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g40985 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g201600
>Glyma.01g201600.1 sequence-type=CDS polypeptide=Glyma.01g201600.1.p locus=Glyma.01g201600 ID=Glyma.01g201600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAACTCAATCTGAAGGAAATTATGCAGAAGCTTTCCAAAATTATTATGAGGCTATGCGACTGAAAATTGATCCCTATGATCGAAGTTGTATACTTTATAACATAGGCCTTATCCACACAAGTAACGAAGAACATATTAAAGCTTTGGAATATTATTTTTGGGCGCTCGAGCGAGACCCATTCTTACCCCAAGCTTTTAATATGGTCGTGATCTGTCATTACGCCATTCGACAAGGAGACACGGAAGTTGCGAAGTCTTGGTTTAATCAAGTTGCTGAATATTGGAAACAAGCTATAGCCCTAACCCCTGGTAACTATATTGAAGCCCAGAATTGGTTGAAGATCACACGACGTTTTGAATAA
Predicted protein sequences of Glyma.01g201600
>Glyma.01g201600.1.p sequence-type=predicted peptide transcript=Glyma.01g201600.1 locus=Glyma.01g201600 ID=Glyma.01g201600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTQSEGNYAEAFQNYYEAMRLKIDPYDRSCILYNIGLIHTSNEEHIKALEYYFWALERDPFLPQAFNMVVICHYAIRQGDTEVAKSWFNQVAEYWKQAIALTPGNYIEAQNWLKITRRFE*






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