SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.01g197900

Feature Type:gene_model
Chromosome:Gm01
Start:53190137
stop:53192717
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g197900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37850.1AT basic helix-loop-helix (bHLH) DNA-binding superfamily protein JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PTHR12565Panther STEROL REGULATORY ELEMENT-BINDING PROTEIN JGI N/AIEA
PTHR12565:SF7Panther JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.01g197900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g197900
ParalogEvidenceComments
Glyma.11g043700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g197900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g40600 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g197900
>Glyma.01g197900.2 sequence-type=transcript locus=Glyma.01g197900 ID=Glyma.01g197900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTAATCTCTCTCTTCAATCTTCATCCTCTCGATCCGTCTTCTAATTTTCCAGTCAAGTGCCCTACACTACATCACATCAAATTAGTAGTAATTTCAAGAAAGATCATGGAAATTGCGTACAACTACTACTTGCCTGAACTTGAAATTGAGGATCCAACCTTCTTTGATCAATACCAGATGGATTCATTTGCTTGTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGTTCCCCTGAGAGCAACTCCTCATATCATTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCATGATCAGTCTTTTACCCCTGCAAGACCAACCAAGAGGCTCAAGAACACTTGTGCCAGTGACTTCATTTCCCACAAGGTTTCTGCTTTTTCATCCTCCCAACTTATTTCCTTTGGGCACTTCAATGCCCCGTCACCATCACATGCTTCCCAGCAATTTCAAAACCTGGACTTCGATGAGAAAGCGTCTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAGGGTTCGTATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCTCAAGAGCACATAATAGCTGAAAGAAAACGAAGGGAAAATATCAGCAAGAGGTTCATCGCTCTTTCCGCTATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTGGATCGGGAGTGCTGGTGAAAAGATCTATTATCTTCGCTGATGATGAAACTTCTGACAGCCACTGTGAGCATTCACTCCCCGAAGTCGAAGTCAGGGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAATTAGAAAAGCTTTACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAGCAAAACTGATGTCACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGTTGCGACAGGCTTTGGTCGGGCATAACTAGTTCAAGGAATTTATGTCTATGATGTGCATGATTACAAGAATAAGTTTAGTCAATAATGATTTTTATCGCAGTGCTTTATTTTTCCTTTTTCGTCCATGATGTGGATTCTGGAGTTACATATCAAGGGCCTGCGAGTATCTGTTTACATAGGACTTACATGGAGTTGTTCATTCTGCTGTGAGGTGTGGGGAGTTTCAACAGAAACAACACATGATGCCAAAGTGTTTTTTTTCTGTTGCTTTTTGCGTAGTTGATTGGTCGGCTATGTTGCCCTACACCAGAATAGCATTTTCAAATCTCAGTAGTTTTTTTCCCTCTCATTAAGAAGGATTTTTGAGAGGCTTTGACTTATAGATCACCTCTTTCTTCTCTGTTTCCCTGTTGTGAAAAAGGGTTCCGGTTTGATAGAAGCTAAATGCCGAGCACTTATTTAAATTTGTTTCTCTTGTCGTTTTGTGTTCTCTTACTTCTCTATAAAATTCTTCTGGTTGTAATAGCGACAAGTTGATTTTTTTTTTCTTTTTTAAAATATATATTGTATGGTTTGGTTGCAGATCTTT
Coding sequences of Glyma.01g197900
>Glyma.01g197900.1 sequence-type=CDS polypeptide=Glyma.01g197900.1.p locus=Glyma.01g197900 ID=Glyma.01g197900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAATTGCGTACAACTACTACTTGCCTGAACTTCAGGAAATTGAGGATCCAACCTTCTTTGATCAATACCAGATGGATTCATTTGCTTGTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGTTCCCCTGAGAGCAACTCCTCATATCATTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCATGATCAGTCTTTTACCCCTGCAAGACCAACCAAGAGGCTCAAGAACACTTGTGCCAGTGACTTCATTTCCCACAAGGTTTCTGCTTTTTCATCCTCCCAACTTATTTCCTTTGGGCACTTCAATGCCCCGTCACCATCACATGCTTCCCAGCAATTTCAAAACCTGGACTTCGATGAGAAAGCGTCTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAGGGTTCGTATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCTCAAGAGCACATAATAGCTGAAAGAAAACGAAGGGAAAATATCAGCAAGAGGTTCATCGCTCTTTCCGCTATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTGGATCGGGAGTGCTGGTGAAAAGATCTATTATCTTCGCTGATGATGAAACTTCTGACAGCCACTGTGAGCATTCACTCCCCGAAGTCGAAGTCAGGGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAATTAGAAAAGCTTTACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAGCAAAACTGATGTCACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGTTGCGACAGGCTTTGGTCGGGCATAACTAG

>Glyma.01g197900.2 sequence-type=CDS polypeptide=Glyma.01g197900.2.p locus=Glyma.01g197900 ID=Glyma.01g197900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAATTGCGTACAACTACTACTTGCCTGAACTTGAAATTGAGGATCCAACCTTCTTTGATCAATACCAGATGGATTCATTTGCTTGTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGTTCCCCTGAGAGCAACTCCTCATATCATTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCATGATCAGTCTTTTACCCCTGCAAGACCAACCAAGAGGCTCAAGAACACTTGTGCCAGTGACTTCATTTCCCACAAGGTTTCTGCTTTTTCATCCTCCCAACTTATTTCCTTTGGGCACTTCAATGCCCCGTCACCATCACATGCTTCCCAGCAATTTCAAAACCTGGACTTCGATGAGAAAGCGTCTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAGGGTTCGTATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCTCAAGAGCACATAATAGCTGAAAGAAAACGAAGGGAAAATATCAGCAAGAGGTTCATCGCTCTTTCCGCTATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTGGATCGGGAGTGCTGGTGAAAAGATCTATTATCTTCGCTGATGATGAAACTTCTGACAGCCACTGTGAGCATTCACTCCCCGAAGTCGAAGTCAGGGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAATTAGAAAAGCTTTACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAGCAAAACTGATGTCACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGTTGCGACAGGCTTTGGTCGGGCATAACTAG
Predicted protein sequences of Glyma.01g197900
>Glyma.01g197900.1.p sequence-type=predicted peptide transcript=Glyma.01g197900.1 locus=Glyma.01g197900 ID=Glyma.01g197900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEIAYNYYLPELQEIEDPTFFDQYQMDSFACPLDDFDFESFSGSPESNSSYHFNSESTPNCFPAESHDQSFTPARPTKRLKNTCASDFISHKVSAFSSSQLISFGHFNAPSPSHASQQFQNLDFDEKASSENMDFAAFVSQGSYEDKSFLSSDNRTNQVGITTRNPIQAQEHIIAERKRRENISKRFIALSAILPGLKKMDKASVLGDAVKYVKQLQERVQTLEEQAAKRTLGSGVLVKRSIIFADDETSDSHCEHSLPEVEVRVSGKDVLIRTQCDKHSGHAAMILSELEKLYFIVQSSSFLPFGNSKTDVTIIAQMNKENCMTAKDLLGRLRQALVGHN*

>Glyma.01g197900.2.p sequence-type=predicted peptide transcript=Glyma.01g197900.2 locus=Glyma.01g197900 ID=Glyma.01g197900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEIAYNYYLPELEIEDPTFFDQYQMDSFACPLDDFDFESFSGSPESNSSYHFNSESTPNCFPAESHDQSFTPARPTKRLKNTCASDFISHKVSAFSSSQLISFGHFNAPSPSHASQQFQNLDFDEKASSENMDFAAFVSQGSYEDKSFLSSDNRTNQVGITTRNPIQAQEHIIAERKRRENISKRFIALSAILPGLKKMDKASVLGDAVKYVKQLQERVQTLEEQAAKRTLGSGVLVKRSIIFADDETSDSHCEHSLPEVEVRVSGKDVLIRTQCDKHSGHAAMILSELEKLYFIVQSSSFLPFGNSKTDVTIIAQMNKENCMTAKDLLGRLRQALVGHN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo