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Report for Sequence Feature Glyma.01g197800

Feature Type:gene_model
Chromosome:Gm01
Start:53170021
stop:53173875
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g197800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G65700.1AT Leucine-rich receptor-like protein kinase family protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
KOG1187 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF462Panther JGI N/AIEA
PF00560PFAM Leucine Rich Repeat JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA
PF08263PFAM Leucine rich repeat N-terminal domain JGI N/AIEA

Proteins Associated with Glyma.01g197800
LocusGene SymbolProtein Name
RLK3 receptor-like protein kinase 3

Expression Patterns of Glyma.01g197800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g197800
ParalogEvidenceComments
Glyma.11g043800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g197800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g40590 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g197800
>Glyma.01g197800.1 sequence-type=CDS polypeptide=Glyma.01g197800.1.p locus=Glyma.01g197800 ID=Glyma.01g197800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGTGTCCTCTTTCTTTTTCTGTTTTTCCAGTTTCTCCATTTTCATTTCCCCAAAACCCTTTCAGCCCCAATCTCAGAGTACCGTGCCCTTCTCTCTCTCCGTTCAGCCATTACCGACGCCACCCCACCTCTTCTCACTTCGTGGAACTCCTCCACCCCTTACTGTTCCTGGCTCGGCGTCACCTGCGACAACCGCCGCCACGTCACCTCCCTAGACCTCACCGGCCTCGACCTCTCCGGCCCCCTCTCCGCCGACGTCGCCCACCTCCCATTCCTCTCCAACCTCTCCCTCGCCTCGAATAAGTTCTCCGGCCCCATTCCTCCCTCACTCTCCGCTCTCTCCGGCCTCCGCTTCCTCAACCTCTCCAACAATGTCTTCAACGAAACCTTCCCCTCGGAGCTCTCGCGCCTCCAGAACCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGTGCTTCCCCTCGCCGTCGCGCAGATGCAGAATCTTCGTCATTTGCATCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCGCCGGAGTATGGACGCTGGCAGCGCCTCCAGTACCTCGCCGTCTCCGGCAACGAGCTCGAGGGGACTATCCCTCCGGAGATCGGAAACTTGTCCAGCCTCCGGGAGCTCTACATCGGCTACTACAACACCTACACCGGGGGCATTCCGCCGGAGATCGGAAATTTGTCGGAGCTGGTGAGGCTCGACGCCGCCTACTGTGGGTTGTCCGGCGAGATTCCGGCGGCGCTGGGAAAGCTTCAGAAGCTGGACACGCTGTTCCTTCAGGTGAATGCATTGTCAGGGTCTTTGACTCCCGAGCTGGGGAACCTGAAGAGCCTGAAATCCATGGATTTGTCTAACAACATGCTCTCCGGTGAGATTCCGGCGAGATTCGGCGAGCTGAAGAATATTACTCTTCTGAATCTGTTCAGGAACAAGCTTCACGGAGCTATACCAGAGTTTATAGGGGAGCTTCCAGCGTTGGAAGTTGTGCAACTGTGGGAGAATAACTTCACAGGTAGCATTCCAGAGGGTTTGGGCAAAAACGGGAGACTCAACCTTGTTGATCTTTCTTCTAACAAGTTAACTGGGACTTTGCCTACTTATCTCTGTTCTGGGAATACTCTTCAGACTCTGATAACTCTTGGGAATTTTCTTTTTGGTCCAATTCCTGAGTCGCTTGGTAGTTGTGAATCCCTTACACGGATTAGAATGGGAGAGAACTTTTTGAATGGTTCCATTCCGAGAGGGCTTTTTGGACTTCCCAAACTAACACAGGTTGAGCTTCAGGATAATTATCTCTCTGGAGAGTTTCCTGAGGTGGGTTCTGTTGCTGTTAATCTTGGTCAGATTACTCTCTCTAACAACCAGCTTTCTGGGGTTCTACCTCCCTCCATTGGTAACTTCTCCAGCGTGCAGAAGCTCCTTCTTGATGGCAACATGTTCACGGGTCGGATACCTCCCCAGATTGGGAGGTTGCAACAGCTTTCTAAGATTGATTTTAGTGGCAACAAGTTCTCGGGTCCTATTGTGCCTGAGATCAGTCAGTGTAAGCTGTTAACTTTCCTTGACCTTAGCCGCAATGAGCTATCTGGAGACATCCCAAATGAGATAACTGGCATGAGGATATTGAATTACTTGAATCTTTCTAGGAATCATTTAGTGGGTGGCATTCCCTCTTCGATATCATCTATGCAAAGCTTGACTTCTGTTGATTTTTCATACAACAACCTGTCTGGTTTGGTGCCTGGTACCGGTCAATTCAGCTACTTCAATTACACGTCTTTCTTGGGAAACCCTGACCTCTGTGGCCCCTATTTGGGTGCTTGCAAGGATGGGGTTGCCAATGGCGCACACCAACCTCATGTTAAAGGTCTCTCCTCTTCTTTTAAGCTGCTACTTGTTGTTGGGTTGCTACTATGTTCCATTGCTTTTGCTGTGGCTGCAATATTCAAGGCCCGGTCACTGAAGAAGGCCAGTGGGGCTCGTGCATGGAAGTTGACTGCGTTCCAACGTTTGGACTTCACTGTCGATGATGTTTTGCATTGCTTGAAGGAGGATAATATTATAGGGAAAGGAGGTGCTGGCATTGTCTACAAAGGGGCTATGCCTAATGGGGATCATGTTGCTGTGAAAAGGCTTCCGGCTATGAGTAGAGGCTCTTCACATGATCATGGCTTCAATGCTGAGATTCAAACATTGGGGCGAATCCGACACAGGCACATTGTTAGGTTGTTGGGCTTCTGTTCAAATCATGAGACAAACCTTTTGGTCTATGAGTACATGCCCAATGGAAGTTTAGGCGAGGTTCTTCATGGAAAGAAAGGGGGTCATTTGCATTGGGATACAAGGTATAAAATTGCGGTGGAGGCTGCCAAGGGGCTTTGCTATCTGCACCATGATTGTTCGCCACTCATTGTCCATCGTGATGTGAAGTCAAACAACATCCTTCTTGATTCTAATCATGAAGCCCATGTTGCTGATTTTGGGCTTGCTAAGTTCCTGCAAGATTCTGGGACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTATGCCTACACATTGAAAGTTGATGAGAAAAGCGATGTGTACAGTTTTGGTGTGGTTCTCTTAGAACTTATAACAGGCAGGAAACCAGTTGGAGAATTTGGTGATGGCGTGGACATAGTGCAATGGGTGAGGAAAATGACGGATTCTAACAAGGAAGGAGTTCTTAAAGTTCTTGATCCTAGACTTCCCTCAGTTCCCCTTCACGAAGTGATGCATGTTTTCTATGTAGCCATGCTGTGCGTTGAAGAACAGGCTGTAGAGAGACCAACTATGCGTGAAGTTGTTCAAATACTGACAGAGCTTCCAAAGCCACCTGACTCTAAAGAGGGGAACTTAACAATAACGGAATCATCTTTGTCATCATCAAACGCTTTAGAATCTCCATCCTCAGCCTCTAAGGAAGATCAAAATCCTCCTCAATCCCCACCACCCGATCTTCTTAGCATTTAA
Predicted protein sequences of Glyma.01g197800
>Glyma.01g197800.1.p sequence-type=predicted peptide transcript=Glyma.01g197800.1 locus=Glyma.01g197800 ID=Glyma.01g197800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRVLFLFLFFQFLHFHFPKTLSAPISEYRALLSLRSAITDATPPLLTSWNSSTPYCSWLGVTCDNRRHVTSLDLTGLDLSGPLSADVAHLPFLSNLSLASNKFSGPIPPSLSALSGLRFLNLSNNVFNETFPSELSRLQNLEVLDLYNNNMTGVLPLAVAQMQNLRHLHLGGNFFSGQIPPEYGRWQRLQYLAVSGNELEGTIPPEIGNLSSLRELYIGYYNTYTGGIPPEIGNLSELVRLDAAYCGLSGEIPAALGKLQKLDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNMLSGEIPARFGELKNITLLNLFRNKLHGAIPEFIGELPALEVVQLWENNFTGSIPEGLGKNGRLNLVDLSSNKLTGTLPTYLCSGNTLQTLITLGNFLFGPIPESLGSCESLTRIRMGENFLNGSIPRGLFGLPKLTQVELQDNYLSGEFPEVGSVAVNLGQITLSNNQLSGVLPPSIGNFSSVQKLLLDGNMFTGRIPPQIGRLQQLSKIDFSGNKFSGPIVPEISQCKLLTFLDLSRNELSGDIPNEITGMRILNYLNLSRNHLVGGIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVANGAHQPHVKGLSSSFKLLLVVGLLLCSIAFAVAAIFKARSLKKASGARAWKLTAFQRLDFTVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNHEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPDSKEGNLTITESSLSSSNALESPSSASKEDQNPPQSPPPDLLSI*






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