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Report for Sequence Feature Glyma.01g196800

Feature Type:gene_model
Chromosome:Gm01
Start:53106926
stop:53109093
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g196800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G65730.1AT xyloglucan endotransglucosylase/hydrolase 6 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0006073GO-bp cellular glucan metabolic process EnsemblGenomesN/AIEA
GO:0006073GO-bp cellular glucan metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0010411GO-bp xyloglucan metabolic process EnsemblGenomesN/AIEA
GO:0042546GO-bp cell wall biogenesis EnsemblGenomesN/AIEA
GO:0071555GO-bp cell wall organization EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall JGI N/AIEA
GO:0048046GO-cc apoplast EnsemblGenomesN/AIEA
GO:0048046GO-cc apoplast JGI N/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016762GO-mf xyloglucan:xyloglucosyl transferase activity EnsemblGenomesN/AIEA
GO:0016762GO-mf xyloglucan:xyloglucosyl transferase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
PTHR10963Panther GLYCOSYL HYDROLASE-RELATED JGI N/AIEA
PTHR10963:SF14Panther JGI N/AIEA
PF00722PFAM Glycosyl hydrolases family 16 JGI N/AIEA
PF06955PFAM Xyloglucan endo-transglycosylase (XET) C-terminus JGI N/AIEA
GN7V-45714SoyCyc9-rxn xyloglucan-specific endo-β-1,4-glucanase Plant Metabolic Network ISS

Expression Patterns of Glyma.01g196800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g196800
ParalogEvidenceComments
Glyma.11g044800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g196800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g40460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g196800
>Glyma.01g196800.1 sequence-type=CDS polypeptide=Glyma.01g196800.1.p locus=Glyma.01g196800 ID=Glyma.01g196800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCATGGCCATCATTAACACTTTTGGAAACGTTGATGTCTATATTCTATTATTATCATCATGGTTTCTCGTATCTGCTGTGTGTGTTTGGGGACGACCCGCCACTTTTCTGCAAGACTTTGAAATCACGTGGTCAAAGACTCATATCAGGCAAATTGATCAAGGCAGATCCATCCAACTCATTCTAGATCAAAACTCTGGTTGTGGCTTTGCTTCCAAGAGTAAGTACATGTTTGGCCGTGTTAGCATGAAGATCAAGCTCATACCCGGAGACTCTGCTGGCACTGTCACTGCATTTTATATGAACTCTGACACCGACACTGTACGTGATGAGCTGGATTTTGAGTTCTTGGGGAACCGTAGTGGTCAGCCTTACACAGTTCAGACAAACATCTATGCTCACGGAAAAGGAGATAGAGAACAAAGGGTCAACCTCTGGTTTGACCCTTCTGCGGATTTTCACACTTATACTATTATGTGGAATCATCATCATATTGTATTCTACGTTGATGATTTTCCCATTAGAGTGTACAAGAACAGTGAGGGAAAGGGAATCCCATACCCAACAATGCAACCAATGGGAGTGTATTCGACATTGTGGGAAGCTGATAATTGGGCAACAAGAGGGGGGTTGGAGAAAATTGATTGGAGTAAAGCACCTTTTTATGCATATTACAAGGACTTTGACATTGAAGGGTGCCCAGTGCCAGGACCTGCCAACTGTGCCTCTAACCAAAGTAATTGGTGGGAAGGGGCTGCATACCAAGCTCTTAATGCCATTGAAGCCCGAAGGTACAGGTGGGTTCGGCTCAACCATATCATCTATGATTACTGCCAAGATAAGTCAAGGTTTCCAGTGATCCCACCAGAGTGCCTTGCCGGCATTTAA
Predicted protein sequences of Glyma.01g196800
>Glyma.01g196800.1.p sequence-type=predicted peptide transcript=Glyma.01g196800.1 locus=Glyma.01g196800 ID=Glyma.01g196800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSMAIINTFGNVDVYILLLSSWFLVSAVCVWGRPATFLQDFEITWSKTHIRQIDQGRSIQLILDQNSGCGFASKSKYMFGRVSMKIKLIPGDSAGTVTAFYMNSDTDTVRDELDFEFLGNRSGQPYTVQTNIYAHGKGDREQRVNLWFDPSADFHTYTIMWNHHHIVFYVDDFPIRVYKNSEGKGIPYPTMQPMGVYSTLWEADNWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPGPANCASNQSNWWEGAAYQALNAIEARRYRWVRLNHIIYDYCQDKSRFPVIPPECLAGI*






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