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Report for Sequence Feature Glyma.01g193100

Feature Type:gene_model
Chromosome:Gm01
Start:52760543
stop:52762530
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g193100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67460.1AT O-Glycosyl hydrolases family 17 protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0046658GO-cc anchored component of plasma membrane EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0030247GO-mf polysaccharide binding EnsemblGenomesN/AIEA
PTHR16631Panther FAMILY NOT NAMED JGI N/AIEA
PTHR16631:SF1Panther JGI N/AIEA
PF00332PFAM Glycosyl hydrolases family 17 JGI N/AIEA
PF07983PFAM X8 domain JGI N/AIEA
GN7V-66423SoyCyc9-rxn glucan endo-1,3-β-D-glucosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.01g193100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g193100
ParalogEvidenceComments
Glyma.11g048700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g193100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g40060 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g193100
>Glyma.01g193100.1 sequence-type=CDS polypeptide=Glyma.01g193100.1.p locus=Glyma.01g193100 ID=Glyma.01g193100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGTGCCTCTTTCCTCTTCTCTTTCTTTGTTCGCTTGGTCTTACTGTTACTGGTCAAGAATTCATTAAGTTCATCAACCTCTGTGAGACAACTGAAGACATTTTACAAGCCTCGTCGCACGCTGAGCTTCCCTTGGCAGTTTCAGTGAATGCTGGAAACCTCAATGAGGTCTCTTTCAGCATTTTGTTAGCTGAAAAATGGCTCAGGCATAACGTTCTTGCACAATACCCTGCTTCAAATATCACCACCATTGTTATTGGAACCACTGCTTTTTGCCAACAGGGCCATCAACACAACAACCTCGCTGTGGTTCTGTCTTCTCTGAAGAATGTCTACCACTCACTTAAGAGATGGGGTTTGGAGAAAGCCATTAAAGTTTCTGCTGCTTTTAATCTGGACTGTTTGTCTCTAAACTCAGTTTCTTTTAACAATGATTTGAAAATGGTCAAACCCCTCATAGAGTTTCTCAAAGAGGTAAACTCCACATATTCTGTGATCCCACATTATGGCTTCTCACATTTTTCTGATGAAAGTTTTAGCTTGGTGTCTTCCCATTTGGAGTCCATGAAAAAGCTTGGATTTTTTCATCTCAACAGCATAAACGTTGCAACCATTGTTCCAAAAGGGAGAAAAACCATAGCAAGAAAGCTTTCAGTTGTTGATTTTAGCCCAATAGGCCCATTCCCAGTAAGGCCAGCTCCAATGCCAGAAGTAGCCAAGTCCCCAATGACTCCTTCTAATGTACCTTTGCCTCCTTTAGCACAAGTGGTTTCTTCACCCCCTCCAATACTTTCTCCCACTTTTGCCCCTGAAGAGCCACCATTTGGTGTTCCAGCTAGCTCTCCTCATGGCTTCACACTCCCTCCTTGCATTCCATTACACAATGGCTCACCCCAAATATTCCCGATCCAGAAACTGTGGTGTGTGGCTAAGCCAAGTGTTCCTGAAGAAACACTGCAACAGGCTATGGAATATGCTTGTGGAGAGGGTGGTGCTGATTGCATGGAGATCACGCCACAGGGAAACTGTTATAATCCAGACACTGTGGTTGCTCATGCCTCCTATGCTTTCAACAGTTACTGGCAGAAGCACAAGAGAAGTGGTGGAACATGCAGCTTTGGAGGAACGGCCATGTTGATCAATTCTGACCCAAGTTTCCTTCACTGTCGGTTTATTCTTAGCTAA
Predicted protein sequences of Glyma.01g193100
>Glyma.01g193100.1.p sequence-type=predicted peptide transcript=Glyma.01g193100.1 locus=Glyma.01g193100 ID=Glyma.01g193100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRCLFPLLFLCSLGLTVTGQEFIKFINLCETTEDILQASSHAELPLAVSVNAGNLNEVSFSILLAEKWLRHNVLAQYPASNITTIVIGTTAFCQQGHQHNNLAVVLSSLKNVYHSLKRWGLEKAIKVSAAFNLDCLSLNSVSFNNDLKMVKPLIEFLKEVNSTYSVIPHYGFSHFSDESFSLVSSHLESMKKLGFFHLNSINVATIVPKGRKTIARKLSVVDFSPIGPFPVRPAPMPEVAKSPMTPSNVPLPPLAQVVSSPPPILSPTFAPEEPPFGVPASSPHGFTLPPCIPLHNGSPQIFPIQKLWCVAKPSVPEETLQQAMEYACGEGGADCMEITPQGNCYNPDTVVAHASYAFNSYWQKHKRSGGTCSFGGTAMLINSDPSFLHCRFILS*






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