SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma.01g190200

Feature Type:gene_model
Chromosome:Gm01
Start:52509017
stop:52509235
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g190200 not represented in the dataset

Glyma.01g190200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.11g052000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


>Glyma.01g190200.1 sequence-type=CDS polypeptide=Glyma.01g190200.1.p locus=Glyma.01g190200 ID=Glyma.01g190200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGACGCTCTATTTCACTTGTAGTGGTCCTCATGGTGCTGGCTGTGACAATGCCAAGCCTTGTAAATTGTAGATTCCTTGCATCACAAGAAAAGGCTACTCATGAACCCGTGAAAGAGAAGGCAAGCACTCAGGATAATATAAGCACCCGAGTTTTGATTAGTAGCAAAATCAACACGATGTCTTCAGGGCCAAGCAGAAGAGGTTCAGGTCATTAA

>Glyma.01g190200.1.p sequence-type=predicted peptide transcript=Glyma.01g190200.1 locus=Glyma.01g190200 ID=Glyma.01g190200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRRSISLVVVLMVLAVTMPSLVNCRFLASQEKATHEPVKEKASTQDNISTRVLISSKINTMSSGPSRRGSGH*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo