SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G67030.1 | AT | zeaxanthin epoxidase (ZEP) (ABA1) | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| KOG2614 | KOG | Kynurenine 3-monooxygenase and related flavoprotein monooxygenases | JGI | N/A | IEA |
| PTHR13789 | Panther | MONOOXYGENASE | JGI | N/A | IEA |
| PTHR13789:SF10 | Panther | JGI | N/A | IEA | |
| PF00498 | PFAM | FHA domain | JGI | N/A | IEA |
| CAROTENOID-PWY | SoyCyc9 | superpathway of carotenoid biosynthesis in plants | Plant Metabolic Network | ISS | |
| PWY-5945 | SoyCyc9 | violaxanthin, antheraxanthin and zeaxanthin interconversion | Plant Metabolic Network | ISS | |
| GN7V-68386 | SoyCyc9-rxn | Zeaxanthin epoxidase | Plant Metabolic Network | ISS |
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Glyma.01g186200 not represented in the dataset |
Glyma.01g186200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.11g055700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.01g186200.1 sequence-type=CDS polypeptide=Glyma.01g186200.1.p locus=Glyma.01g186200 ID=Glyma.01g186200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCTACCTTGTCATGCAACTCTTTCAATCACTCAATGGCAGTTTTCTCAAAATCTCATTTCTCAATTCTTATGTACAAAGAGCTTTCACTGGATATTTCACCTTGTGTGAGTTATGGAAGCAGAACAACAAAGCAAAGGAAGACACTGATGCAGATCAAAGCAACAGTGGCAGAGGAACCTCCTGGTGTTTGGAAAACTGTGGTTGTGTCTGAAAATGGAGGAGGAGGGGATGGTGCCCCTCAGAAGAAGAAGAAGCTTAAGGTACTTGTGGCTGGTGGAGGCATTGGTGGTTTTGAGAAGGATATGAGTGCTATAAGAGGGGAGGGGCAGTATAGGGGTCCAATTCAGATACAAAGCAATGCTTCGGCTGATTTGGAAGCTATAGATTTGGAGGTTGCTGAAGAAGTTATGAGAGCTGGTTGTATCACGGATGATAGGATCAATGGCCTCGTGGATGGGATTTCTGGCTCTTGGTACATCAAGTTTGATACGTTCACTCCTGCAGCTGAACGTGGGCTTCCAGTCACTAGAGTTATTAGTCGAATGACTTTACAAGATATCCTTGCTCGTGCAGTTGGGGAAGATGCCATAATGAATGACAGTAATGTTGTTGATTTTGTTGACCATGGGGGCAAGGTAACAGTGGAGCTGGAGAATGTTCAGAAATACGATGGAGATCTCTTGGTTGGAGCAGATGGGATATGGTCCAAGGTGAGGAAAAAGTTATTTGGCCAAATAGAAGCTACTTACTCTGGCTATACTTGTTATACTGGTATTGCAGATTTTGTGCCTGCTGACATTGAATCAGTTGGGTACCAAGTATTCTTAGGACATAAACAATACTTTGTATCTTCGGATGTTGGTGCTGGAAAGATGCAATGGTATGGATTTCACCAAGAACCTGCTGGTGGTGCTGATATCCCCAATGGGAAAAAGGAAAGATTTCTTAAGATATTCGAGGGTTGGTGTGATAACGTAATTGATTTGATACATGCCACAGAAGAAGAGGCAATTCTTCGACGAGACATATATGACAGGACGCCAACATTTACATGGGGAAAGGGCCGTGTCACCTTGCTTGAACTAACCCAAAAAAAATGCATAAAATTAAAATATTCCTTACTTATGGATGCAATGGACATCAACAAAGTCAAAATATCTATGGAACACTCAAATGATGTGGACAGTTATCAACTTGCATTGGAGTTGGACAATGCATGGCAACGAAGTATCAAATCAGGTTCTCCAATTGACATTGATTCTTCCTTAAAGAGCTATGAGAGAGAAAGAAGATTAAGAGTTGCCATTGTTCATGGAATGGCTAGAATGGCTGCTATGATGGCTTCCACCTACAAGGCATATCTTGGTGTTGGTCTTGGGCCATTAGAATTTTTGACCAAGTTTTGGATACCGCATCCTGGAAGAGTTGGAGGAAGGTTTTTTACTGACAAGATGATACCTTTGATGTTGAACTGGATATTAGGTGGTGTAACAGCCGTCTCCAAACTTGAAGGCAGACCAGTATGTTGTAGGCTCTCAGACAAAGCAAACGGCCAGTTACACAGATGGTTTGAAGCCAACAATGCACTTGAGCGTGCCATTAATAGGGAGTGGATTTTATTACCATGTGGAGATGAAGCAGGTACTACGAAACCTATATGTCTAAGTCAAGATGAGATTAAACCCTGCACGATCGGGGGACAAAAAGATCATCCAGGCAGTTCAATTATAATACCTTTACCCCAGGTTTCTCAAATACATGCAAGAATTAACTATAAGGATGGTGCGTTCTTCTTGACTGATTTGCGGAGTCAACATGGCACCTGGATCACAGACAATGAAGGAAGGCGGTACAAGGTACCTCCAAATTATCCTGCTCGCGTCCGTCCATCTGATGTGATTGAGTTTGGTTCTGATAAGGTGACAAGATCTGCTCCAAGAGAGTCTGAAAAGGAAGGAACAAAACTTTATCAGAAAGTATGA
>Glyma.01g186200.1.p sequence-type=predicted peptide transcript=Glyma.01g186200.1 locus=Glyma.01g186200 ID=Glyma.01g186200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASTLSCNSFNHSMAVFSKSHFSILMYKELSLDISPCVSYGSRTTKQRKTLMQIKATVAEEPPGVWKTVVVSENGGGGDGAPQKKKKLKVLVAGGGIGGFEKDMSAIRGEGQYRGPIQIQSNASADLEAIDLEVAEEVMRAGCITDDRINGLVDGISGSWYIKFDTFTPAAERGLPVTRVISRMTLQDILARAVGEDAIMNDSNVVDFVDHGGKVTVELENVQKYDGDLLVGADGIWSKVRKKLFGQIEATYSGYTCYTGIADFVPADIESVGYQVFLGHKQYFVSSDVGAGKMQWYGFHQEPAGGADIPNGKKERFLKIFEGWCDNVIDLIHATEEEAILRRDIYDRTPTFTWGKGRVTLLELTQKKCIKLKYSLLMDAMDINKVKISMEHSNDVDSYQLALELDNAWQRSIKSGSPIDIDSSLKSYERERRLRVAIVHGMARMAAMMASTYKAYLGVGLGPLEFLTKFWIPHPGRVGGRFFTDKMIPLMLNWILGGVTAVSKLEGRPVCCRLSDKANGQLHRWFEANNALERAINREWILLPCGDEAGTTKPICLSQDEIKPCTIGGQKDHPGSSIIIPLPQVSQIHARINYKDGAFFLTDLRSQHGTWITDNEGRRYKVPPNYPARVRPSDVIEFGSDKVTRSAPRESEKEGTKLYQKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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