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Report for Sequence Feature Glyma.01g178100

Feature Type:gene_model
Chromosome:Gm01
Start:51444982
stop:51449487
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g178100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36790.1AT Major facilitator superfamily protein JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
KOG1330 KOG Sugar transporter/spinster transmembrane protein JGI N/AIEA
KOG2532 KOG Permease of the major facilitator superfamily JGI N/AIEA
PTHR24003Panther MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED JGI N/AIEA
PTHR24003:SF22Panther JGI N/AIEA
PF07690PFAM Major Facilitator Superfamily JGI N/AIEA

Expression Patterns of Glyma.01g178100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g178100
ParalogEvidenceComments
Glyma.11g064100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g178100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g38460 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g178100
>Glyma.01g178100.2 sequence-type=transcript locus=Glyma.01g178100 ID=Glyma.01g178100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAATACATGTCTACGTTGACTTGCGAGTAGAGAGATTCCGTGGCAGTACTTGCATGACGATGACGAAGATGAAGGAGATGATACTGGTTACAGTTGAGATTTATCATTTAACCTAACCTCTATTACAGTTATAGGTTGATAGTTTATTGCCTCAGATCCGCCATGGACGCAGCTCCGAAGGCCTTTGTCTGATTTCCTCTTTCTTTCACTTGTCATGGGACTGAATCGAACTCCAAGACATAACCCTGTTCTTCCAACCAAATCTCCAATTCTCAGTCGTTCACATTCTCGTTCTCAGACCATGAAAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGCTGCTATAATGGAGCGTGCAGATGAAAACCTTCTTCCATCTGTCTACAAAGAAGTTAGTGAAACATTTAATGCTGGACCATCAGATTTGGGTTACCTAACATTCGTAAGGAACTTTGTTCAGGGATTATCATCTCCTCTAGCTGGTATACTTGTTATCAACTATGATCGCCCGACAATTCTTGCCATGGGCACTTTCTGCTGGGCTTTATCTACTGCTGCTGTGGGCGTTTGCCACGATTTTCTGCAGGTTGCATTCTGGAGAGCAATAAATGGCTTTGGCTTGGCAATTGTGATTCCAGCACTCCAGTCTTTCATCGCTGATAGCTACAAGGATGGAGTGAGAGGAACCGGGTTTGGATTGCTGAGTCTCGTTGGTAACTTAGGAGGCATAGGAGGTGGTGTTTTGGCTACTGTCATGGCCGGCCAACAGTTTTGGGGCATACAAGGATGGCGGTGCGCCTTCATTTTGATGGCAACTTTGAGTGCATTAATTGGATTCCTTGTTTTACTATACGTTGTTGACCCAAGAAAAAGATTTCCTACCACACGTGATGCTAGTGAGAGTTCAGACAGGGATGACACTGTCTATAAAGGCAATGCTAGTGCAGCATCAATATGGATAGACTCTTGGGCAGCCACGAAAGCTGTGATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGGTTTTGATAACAATACGTCAGCAACCCTCCTGAGTCTTTTTGCTATTGGATGTGCTATGGGGTCATTCATTGGTGGATCAATAGCTGATCAACTATCACAAGTCTACCCTCATTCTGCTCGTACCATGTGCGCACAATTTAGTGCCTTTATGGGCATTCCATTCTCATGGTTTCTTCTTAAGCTGGAACGGTGCGGCTGCAAATGCTCCTATGTTTGCTGAGGTTGTCCCTGTAAAACACCGTACCATGATTTATGCATTTGATCGAGCTTTTGAAGGCTCGTTTTCTTCTATTGCGGCTCCTCTGGTTGGGATTCTTTCTGAGAAGATGTTTGGCTATAATTCAAAGTCTGTTGATCCCATCAAAGGATCTTCACCAGAGGCTCTTGCCTTGTCCAAGGGCCTTCTTTCCATGATGGCTGTTCCATTTGGTTTGTGTTGTTTATGCTACACCCCTCTATATTACATATTTAGGCGGGACCGTGAAAATGCTAGAATGCTTGCTGTGAAAGAGGAGGAGATGATGTGAGACACAACACAACACAACACACGTTTTTAAGTATGGTAGATCATTTTAAAGGAGCCCTCTAGCTCTCCTCTGCTTGTGAATTGGGTCCCCATTTAATTGGAGTTTAAAGCTCCGAAAAACACGTGGTTCCGACTTTTGAATCCAACTTCGAACAATGACCTCATTTGATTTTTTTATTTGAAGAATCCAGGTTAATCATACATTCATGGTTCCGTCATGGCTAGGTTGCTTATTACCGAGGATTGAACTCACTCTGGCTTCTGAGCCATTTCTTGAGATGGCATCTGTAGCTGAATGGATCAGAAATATCAGGATATTTAACCCAGGCTCATACTGTTTTGTGGCGAGATCATCTTGTTTTCATACGATTGTACACTATAAAATACACAAGTAAATTTGCATTCTTGGTTCAACACTTCGACTACACAAAACAACAATGCTAATGAAGTA
Coding sequences of Glyma.01g178100
>Glyma.01g178100.1 sequence-type=CDS polypeptide=Glyma.01g178100.1.p locus=Glyma.01g178100 ID=Glyma.01g178100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGACTGAATCGAACTCCAAGACATAACCCTGTTCTTCCAACCAAATCTCCAATTCTCAGTCGTTCACATTCTCGTTCTCAGACCATGAAAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGCTGCTATAATGGAGCGTGCAGATGAAAACCTTCTTCCATCTGTCTACAAAGAAGTTAGTGAAACATTTAATGCTGGACCATCAGATTTGGGTTACCTAACATTCGTAAGGAACTTTGTTCAGGGATTATCATCTCCTCTAGCTGGTATACTTGTTATCAACTATGATCGCCCGACAATTCTTGCCATGGGCACTTTCTGCTGGGCTTTATCTACTGCTGCTGTGGGCGTTTGCCACGATTTTCTGCAGGTTGCATTCTGGAGAGCAATAAATGGCTTTGGCTTGGCAATTGTGATTCCAGCACTCCAGTCTTTCATCGCTGATAGCTACAAGGATGGAGTGAGAGGAACCGGGTTTGGATTGCTGAGTCTCGTTGGTAACTTAGGAGGCATAGGAGGTGGTGTTTTGGCTACTGTCATGGCCGGCCAACAGTTTTGGGGCATACAAGGATGGCGGTGCGCCTTCATTTTGATGGCAACTTTGAGTGCATTAATTGGATTCCTTGTTTTACTATACGTTGTTGACCCAAGAAAAAGATTTCCTACCACACGTGATGCTAGTGAGAGTTCAGACAGGGATGACACTGTCTATAAAGGCAATGCTAGTGCAGCATCAATATGGATAGACTCTTGGGCAGCCACGAAAGCTGTGATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGGTTTTGATAACAATACGTCAGCAACCCTCCTGAGTCTTTTTGCTATTGGATGTGCTATGGGGTCATTCATTGGTGGATCAATAGCTGATCAACTATCACAAGTCTACCCTCATTCTGCTCGTACCATGTGCGCACAATTTAGTGCCTTTATGGGCATTCCATTCTCATGGTTTCTTCTTAAGGTGATCCCTCAGTCAGTAAGTAGTTTTCCTATCTTTTCTGTCACCCTCTTTATAATGGGTCTAACTATCAGCTGGAACGGTGCGGCTGCAAATGCTCCTATGTTTGCTGAGGTTGTCCCTGTAAAACACCGTACCATGATTTATGCATTTGATCGAGCTTTTGAAGGCTCGTTTTCTTCTATTGCGGCTCCTCTGGTTGGGATTCTTTCTGAGAAGATGTTTGGCTATAATTCAAAGTCTGTTGATCCCATCAAAGGATCTTCACCAGAGGCTCTTGCCTTGTCCAAGGGCCTTCTTTCCATGATGGCTGTTCCATTTGGTTTGTGTTGTTTATGCTACACCCCTCTATATTACATATTTAGGCGGGACCGTGAAAATGCTAGAATGCTTGCTGTGAAAGAGGAGGAGATGATGTGA

>Glyma.01g178100.2 sequence-type=CDS polypeptide=Glyma.01g178100.2.p locus=Glyma.01g178100 ID=Glyma.01g178100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGACTGAATCGAACTCCAAGACATAACCCTGTTCTTCCAACCAAATCTCCAATTCTCAGTCGTTCACATTCTCGTTCTCAGACCATGAAAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGCTGCTATAATGGAGCGTGCAGATGAAAACCTTCTTCCATCTGTCTACAAAGAAGTTAGTGAAACATTTAATGCTGGACCATCAGATTTGGGTTACCTAACATTCGTAAGGAACTTTGTTCAGGGATTATCATCTCCTCTAGCTGGTATACTTGTTATCAACTATGATCGCCCGACAATTCTTGCCATGGGCACTTTCTGCTGGGCTTTATCTACTGCTGCTGTGGGCGTTTGCCACGATTTTCTGCAGGTTGCATTCTGGAGAGCAATAAATGGCTTTGGCTTGGCAATTGTGATTCCAGCACTCCAGTCTTTCATCGCTGATAGCTACAAGGATGGAGTGAGAGGAACCGGGTTTGGATTGCTGAGTCTCGTTGGTAACTTAGGAGGCATAGGAGGTGGTGTTTTGGCTACTGTCATGGCCGGCCAACAGTTTTGGGGCATACAAGGATGGCGGTGCGCCTTCATTTTGATGGCAACTTTGAGTGCATTAATTGGATTCCTTGTTTTACTATACGTTGTTGACCCAAGAAAAAGATTTCCTACCACACGTGATGCTAGTGAGAGTTCAGACAGGGATGACACTGTCTATAAAGGCAATGCTAGTGCAGCATCAATATGGATAGACTCTTGGGCAGCCACGAAAGCTGTGATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGGTTTTGATAACAATACGTCAGCAACCCTCCTGAGTCTTTTTGCTATTGGATGTGCTATGGGGTCATTCATTGGTGGATCAATAGCTGATCAACTATCACAAGTCTACCCTCATTCTGCTCGTACCATGTGCGCACAATTTAGTGCCTTTATGGGCATTCCATTCTCATGGTTTCTTCTTAAGCTGGAACGGTGCGGCTGCAAATGCTCCTATGTTTGCTGA
Predicted protein sequences of Glyma.01g178100
>Glyma.01g178100.1.p sequence-type=predicted peptide transcript=Glyma.01g178100.1 locus=Glyma.01g178100 ID=Glyma.01g178100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLNRTPRHNPVLPTKSPILSRSHSRSQTMKTTQIFGVSLSLILINLAAIMERADENLLPSVYKEVSETFNAGPSDLGYLTFVRNFVQGLSSPLAGILVINYDRPTILAMGTFCWALSTAAVGVCHDFLQVAFWRAINGFGLAIVIPALQSFIADSYKDGVRGTGFGLLSLVGNLGGIGGGVLATVMAGQQFWGIQGWRCAFILMATLSALIGFLVLLYVVDPRKRFPTTRDASESSDRDDTVYKGNASAASIWIDSWAATKAVIKVKTFQIIVLQGIIGSLPWTAMVFFTMWFELIGFDNNTSATLLSLFAIGCAMGSFIGGSIADQLSQVYPHSARTMCAQFSAFMGIPFSWFLLKVIPQSVSSFPIFSVTLFIMGLTISWNGAAANAPMFAEVVPVKHRTMIYAFDRAFEGSFSSIAAPLVGILSEKMFGYNSKSVDPIKGSSPEALALSKGLLSMMAVPFGLCCLCYTPLYYIFRRDRENARMLAVKEEEMM*

>Glyma.01g178100.2.p sequence-type=predicted peptide transcript=Glyma.01g178100.2 locus=Glyma.01g178100 ID=Glyma.01g178100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLNRTPRHNPVLPTKSPILSRSHSRSQTMKTTQIFGVSLSLILINLAAIMERADENLLPSVYKEVSETFNAGPSDLGYLTFVRNFVQGLSSPLAGILVINYDRPTILAMGTFCWALSTAAVGVCHDFLQVAFWRAINGFGLAIVIPALQSFIADSYKDGVRGTGFGLLSLVGNLGGIGGGVLATVMAGQQFWGIQGWRCAFILMATLSALIGFLVLLYVVDPRKRFPTTRDASESSDRDDTVYKGNASAASIWIDSWAATKAVIKVKTFQIIVLQGIIGSLPWTAMVFFTMWFELIGFDNNTSATLLSLFAIGCAMGSFIGGSIADQLSQVYPHSARTMCAQFSAFMGIPFSWFLLKLERCGCKCSYVC*






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