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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.01g169800

Feature Type:gene_model
Chromosome:Gm01
Start:50726088
stop:50733347
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g169800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36400.1AT FAD-linked oxidases family protein JGI N/AIEA
GO:0019516GO-bp lactate oxidation EnsemblGenomesN/AIEA
GO:0022904GO-bp respiratory electron transport chain EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0004458GO-mf D-lactate dehydrogenase (cytochrome) activity EnsemblGenomesN/AIEA
GO:0008762GO-mf UDP-N-acetylmuramate dehydrogenase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016614GO-mf oxidoreductase activity, acting on CH-OH group of donors EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
GO:0051990GO-mf (R)-2-hydroxyglutarate dehydrogenase activity EnsemblGenomesN/AIEA
GO:0071949GO-mf FAD binding EnsemblGenomesN/AIEA
KOG1232 KOG Proteins containing the FAD binding domain JGI N/AIEA
PTHR11748Panther D-LACTATE DEHYDROGENASE JGI N/AIEA
PTHR11748:SF17Panther CYTOKININ DEHYDROGENASE 2-RELATED JGI N/AIEA
PF01565PFAM FAD binding domain JGI N/AIEA
PF02913PFAM FAD linked oxidases, C-terminal domain JGI N/AIEA
PWYQT-1SoyCyc9 lysine degradation III Plant Metabolic Network ISS
GN7V-59615SoyCyc9-rxn 2-hydroxyglutarate dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.01g169800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g169800 not represented in the dataset
Glyma.01g169800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g169800
ParalogEvidenceComments
Glyma.11g073500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g169800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g37490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g169800
>Glyma.01g169800.2 sequence-type=transcript locus=Glyma.01g169800 ID=Glyma.01g169800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGGTAGCTCAAGCAAACTCAAAAAAAACTGTTTGGATATGAAATTATGCTTTTTATAACATCATCAGCGTTAAAATTTGCAGATTTTGTCACATATTGAACCTTATGTATATGAATGGACATCTAAGCACCGAGGTAGCATTAGCGCGGAGCATGGCCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACATGAAACTGTACAAGTGATGGCTTCAATCAAGAATTTGCTGGACCCCAATCACATACTCAACCCATATAAAGTTCTTCCTCAGTCTCTCATTTCATAATCTCTTGTCGAAAACTTGATGTTGTATTCATATCTTTGTCACTTCCTTGAAGTGAGACAAACTTCTTTACTTGATCCAGTAAGTACACAGGAATTCTCTCCACATGACAGTGCCCTCACTCATCTAAAAAGTGTATTGCTACATTATGAATAATAAATATAGATATTTGACTAAAGTGTAATAAATTGGTAACAATCTTTTATTATCTCACCCCCCTCCAACTA
Coding sequences of Glyma.01g169800
>Glyma.01g169800.1 sequence-type=CDS polypeptide=Glyma.01g169800.1.p locus=Glyma.01g169800 ID=Glyma.01g169800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGATTTTGTCACATATTGAACCTTATGTATATGAATGGACATCTAAGCACCGAGGTAGCATTAGCGCGGAGCATGGCCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACATGAAACTGTACAAGTGATGGCTTCAATCAAGAATTTGCTGGACCCCAATCACATACTCAACCCATATAAAGTTCTTCCTCAGTCTCTCATTTCATAA

>Glyma.01g169800.2 sequence-type=CDS polypeptide=Glyma.01g169800.2.p locus=Glyma.01g169800 ID=Glyma.01g169800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGGTAGCTCAAGCAAACTCAAAAAAAACTGTTTGGATATGA
Predicted protein sequences of Glyma.01g169800
>Glyma.01g169800.1.p sequence-type=predicted peptide transcript=Glyma.01g169800.1 locus=Glyma.01g169800 ID=Glyma.01g169800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPGTCSVSELRTSEPPSLTPSKIHTQPPLSIIFNPIPKYRNVTNLTLCASAAIVHRKLPNKFEAEPETMANHNSRFLLRSFIPFFHRRMNSPLLPSATSCPRLTSGTAFDEKFTQLPSNIVRGDHRQVLSFFNPSRNFAETKQWGVGIRHKCFGSMAGSVQRNPRFSKLNDDDVRYLEGILGSKNVVQDEDKLVTSNTDWMHKYKGSSKLLLQPRTADQVSQILKYCNSRNLAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNKIISFDKVSGILVCEAGCILENIMSFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGVEAVLANGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNVAFLACKDYSSCQKLLQEAKGKLGEILSAFEFLDVQSMNLVLNHMEGARNPLPSLHNFYVLIETTGSDESSDKQKLEAFLLGSMENELISDGVLAQDINQASSFWLLREGIPEALMRAGAVYKYDLSIPLEHMYNLVEEMRSRLGNTANVIGYGHLGDGNLHLNISTSHYDDKILSHIEPYVYEWTSKHRGSISAEHGLGLMKANEIFYSKSHETVQVMASIKNLLDPNHILNPYKVLPQSLIS*

>Glyma.01g169800.2.p sequence-type=predicted peptide transcript=Glyma.01g169800.2 locus=Glyma.01g169800 ID=Glyma.01g169800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPGTCSVSELRTSEPPSLTPSKIHTQPPLSIIFNPIPKYRNVTNLTLCASAAIVHRKLPNKFEAEPETMANHNSRFLLRSFIPFFHRRMNSPLLPSATSCPRLTSGTAFDEKFTQLPSNIVRGDHRQVLSFFNPSRNFAETKQWGVGIRHKCFGSMAGSVQRNPRFSKLNDDDVRYLEGILGSKNVVQDEDKLVTSNTDWMHKYKGSSKLLLQPRTADQVSQILKYCNSRNLAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNKIISFDKVSGILVCEAGCILENIMSFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGVEAVLANGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNVAFLACKDYSSCQKLLQEAKGKLGEILSAFEFLDVQSMNLVLNHMEGARNPLPSLHNFYVLIETTGSDESSDKQKLEAFLLGSMENELISDGVLAQDINQASSFWLLREGIPEALMRAGAVYKYDLSIPLEHMYNLVEEMRSRLGNTANVIGYGHLGDGNLHLNISTSHYDDKVAQANSKKTVWI*






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