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Report for Sequence Feature Glyma.01g168900

Feature Type:gene_model
Chromosome:Gm01
Start:50639788
stop:50646581
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g168900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51120.1AT DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding JGI N/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation JGI N/AIEA
GO:0016570GO-bp histone modification JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1946 KOG RNA polymerase I transcription factor UAF JGI N/AIEA
PTHR26218Panther JGI N/AIEA
PTHR26218:SF58Panther JGI N/AIEA
PF02201PFAM SWIB/MDM2 domain JGI N/AIEA
PF02213PFAM GYF domain JGI N/AIEA
PF03126PFAM Plus-3 domain JGI N/AIEA

Expression Patterns of Glyma.01g168900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g168900 not represented in the dataset
Glyma.01g168900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g168900
ParalogEvidenceComments
Glyma.11g074600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g168900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g37393 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g168900
>Glyma.01g168900.1 sequence-type=CDS polypeptide=Glyma.01g168900.1.p locus=Glyma.01g168900 ID=Glyma.01g168900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCAACCGCTTCAACCGCAGCCGGAGACCGCCGCGGTCGGCGCTAGGGATTTGGAGCAGTCGCGGCTGGTCGGAGTTCCCGTGGCGGAGAGAGCGGGAAACAGTTGCGCAGCGAATTTGCAGGTGACCGTCGTGGACGGTGGTGCCGTTTTTAAACGGAAGCGCGGTCGGCCGGCCAAGGGAGCGCCGAAAGTGGCGCCTCCTGTGAGGCAACAGCAGGACGAGGAGGACGTTTGTTTTATTTGCTTCGACGGTGGCAGCCTCGTTCTCTGTGATCGCCGGGGATGTCCAAAAGCGTATCATCTCGCGTGTATTAAGCGAGACGAAGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGTCGTCACATTATATGTGCTATACTTGCCCGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGATGATTGAGAACATAGCCCAGGGAAATAAGGAAAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTTCAAGCTAAAAATCCATGGAAAGGTGCTGCTCCTATGAGTTATAAGATTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGCTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGATAAGGGTGATTGCTTGGATAGGATAACTTCTGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAATAAAAATAATCTCCGTGATCCTCAACAGAAGTCACAAATTGTTTGTGACTCTAGACTTTTAAATTTGTTTGGAAAAACACGTGTTGGCCACATTGAAATGCTAAAGCTCCTTGAGCCCCACTTTCTTTTAAAAGACAATGGCCCTGCAGAAAATACTTTTGGAGCGGGAATTATTAATGCTGTTGCTAGTGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTGGTTGATGACAAGAGATGTAAGACACATAATCCAGATGCATATGCTGCTATAGATGTTCACAACATTAACTTGATCTACATGCGGCGAAGTCTGATGGAGAATCTAACTGAAGATACTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATATCTAGCAATGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCCGAACCTTACAAAATTGGCACAAGAACAACAGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCAGTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTACGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTTAAAGAATATGTGGAGAAGTTGCAGCTACTAAACTCTCCGGAGGAACGTCAACGCAGGCAGCATGAAATTCCAGATGTACACTCCGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAATATATTTTCAAAATATCTTGGGTTTGATAGAAAAGAGAGGGGTTCTATTTTTCCAAGAATTTCAAATGGCGCCTCCAACGACATGGGAGGTAAAACACAAGACTTGCCTGCTACCCGAGAACCGGTTGGGAATACATGCACAGTGAAGAATAATATCAACTGTGATGATACAGCTATTGATGATAGCACTAATGCAGTTGTGAAATCAGAAGTGTCCAGTGTTGCACCGGACATTTCATCACCGCTTCTCTTTACTGGGATGCAGCAGTCACTGAATGATTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTATACAAGTGGAATGCAAGTGGATGTTTCCCTCCAGATCTCCGAATATGGAGGGTAGGTGAGAAACAAGATAACTCTATACTGTTAACCGATGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCAATTGCTCTCTTTAGGGGTCAGTGTTACATTGGATAATAAAGATAATAGTCAGGATGCTGGGAAGAATGGAAAGAATGAAATTTCTGCAGATGGCCAAATTATAGAACAGAGCAAGGAACAAAAGCCACAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGACGAACCTGTTAGGAGCAATGGAGGGCATGGCCAACTGCATGTATACCCTTCACTACTGCCAACTGCCATTCCTGAGAAATTGAATGAGGATCCTTCTGATAAATTAAGGAAAGGCCATGGGATTGTGGGAAATTCCGAAAATAGAAATAATGGCTCGATCAGGACATCTGATGGGCAGAGTAATAGTGGGCATAGTTATCAGAAGCAATCAGATAGTGAAGAGAATTCAGGGAAATCTTCTGGACAGACCTGGAGACACCCTAATGTAAATAGTTCTTCCGATTGCTTGGTTACCATGTCAGCTCATGTTTCTGGTACAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCGGCAGCATGTAATACATCTTCTGGACAGACCTGGAGTCACCCTAACGTAAATAGTTCTTCCAATTGCTTGGTTAACACATCAGCCCATGTTTCTGATACAAAATCATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACCTGGAGACACCCTGATATAAATAGTTCTTCCAATTGCTTAGTTACCACACCAGCTCATGTTTCAGCTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCCGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGAGGATTTAACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATGCTTGATGCGGGTAAAGGTGATGCACTGAGCTCTACTGGTGATTTAAACTTACCATCTCAGCCGACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCATCAAAGAATTTCTGCGGAGCATCCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCATTGTTCCATCCCCTGGAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGTTAGAGAATACACACTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACGGCAGTGCAGGAAAACAGGAGTTCTAGTTCATACACTTCTGCAGTAACTCCAGGCTTTGGGGATAGCCAAACAAAATATGGCAGTGATCGATTTTCTGTGTCCAGAGATCGGGGTTTTCAAGGTCATAGTAGGGAATCAGGTTTGAGTAGAAGCAGAATTCCATATAACAGGCAACCGTCATATGGTGTTGGAAATGGAGCATCATATAAGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTATTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA
Predicted protein sequences of Glyma.01g168900
>Glyma.01g168900.1.p sequence-type=predicted peptide transcript=Glyma.01g168900.1 locus=Glyma.01g168900 ID=Glyma.01g168900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEQPLQPQPETAAVGARDLEQSRLVGVPVAERAGNSCAANLQVTVVDGGAVFKRKRGRPAKGAPKVAPPVRQQQDEEDVCFICFDGGSLVLCDRRGCPKAYHLACIKRDEEFFRSKAKWNCGWHICSVCQKSSHYMCYTCPYSLCKGCTKDADFVCVRENKGLCGICMRTIMMIENIAQGNKEKCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLQAKNPWKGAAPMSYKIQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLDKGDCLDRITSGGDSGVSLPECTKWASKELLEFVAHMKNGDTSLLSQFDVQTLLLEYANKNNLRDPQQKSQIVCDSRLLNLFGKTRVGHIEMLKLLEPHFLLKDNGPAENTFGAGIINAVASEGEAIDNYNKQLMLVDDKRCKTHNPDAYAAIDVHNINLIYMRRSLMENLTEDTEKIHEKVVGSFVRIRISSNDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRQHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRKERGSIFPRISNGASNDMGGKTQDLPATREPVGNTCTVKNNINCDDTAIDDSTNAVVKSEVSSVAPDISSPLLFTGMQQSLNDFLNDRSWHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTDALSGKCSKNVSLPFNSQLLSLGVSVTLDNKDNSQDAGKNGKNEISADGQIIEQSKEQKPQVDNTSTQSDGKDEPVRSNGGHGQLHVYPSLLPTAIPEKLNEDPSDKLRKGHGIVGNSENRNNGSIRTSDGQSNSGHSYQKQSDSEENSGKSSGQTWRHPNVNSSSDCLVTMSAHVSGTKTSPHKLGFDLHNPPSPPAACNTSSGQTWSHPNVNSSSNCLVNTSAHVSDTKSSPHKLGFDLHNPPSPPACNTSSGQTWRHPDINSSSNCLVTTPAHVSATKTSPHKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEDLTEGSKNDCLSFVAELSPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHHQRISAEHPSRSSKVEVGTKNGVSGNQWDSGSENSPIVPSPGTLGLAIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSSSYTSAVTPGFGDSQTKYGSDRFSVSRDRGFQGHSRESGLSRSRIPYNRQPSYGVGNGASYKPLPKGQRVCKFYESGYCKKGASCDYWHP*






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