Glyma.01g163200

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Report for Sequence Feature Glyma.01g163200

Feature Type:	gene_model
Chromosome:	Gm01
Start:	50097386
stop:	50099997
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g163200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63855.3	AT	Putative methyltransferase family protein	JGI	N/A	IEA
KOG2793	KOG	Putative N2,N2-dimethylguanosine tRNA methyltransferase	JGI	N/A	IEA
PTHR14614	Panther	HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN	JGI	N/A	IEA
PF10294	PFAM	Putative methyltransferase	JGI	N/A	IEA

Expression Patterns of Glyma.01g163200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g163200 not represented in the dataset	Glyma.01g163200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01g163200

Paralog	Evidence	Comments
Glyma.11g080200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g163200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g36790	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g163200

Limit To All Plant Sequences

>Glyma.01g163200.2 sequence-type=transcript locus=Glyma.01g163200 ID=Glyma.01g163200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTTTCTCCCCTCTCTCTGCGTATATTGGCTTCATGTAACATTTTCGGCTGGAAATTTGGAGGTTTCAGTTTAACTCCTTCCGATGAGAGCCATGGAGGATTGGAATGATGAACAGTGTGATGACACCCTCACCATGACCACCGTTTCTCAGCACTTTTTCGGCGATGATTCTGAAACGCCAAGCTTCTCCATCTCCATCATCGAGAACATGAAGGAAGACTATGGCCTATTCGTGTGGCCCTGCAGCGTAGTTCTCGCCGAGTACATTTGGCAACACAAGCATCGATTTTCAGGAGCCACCGTTGTTGAGCTAGGTGCTGGAACTTCCCTGCCTGGCTTGGTTGCAGCAAAACTCGGTGCCCGTGTCACTCTTACTGATGACTCCACCAGATTAGAGGTGCTTGACAACATGAGAAGGGTGTTGGGATTGACATGGGGAGTTTGGGATTCATCCATATTCAGTTTACAGCCAACAATTATTCTAGGGGCTGATGTGCTGTACGATTCAAAAGCCTTTGATAACCTCTTTGCCACTGTGACTTTCCTGCTCCGAAATTCTCCTGGGTCAACTTTTATAACCTCATACCATAACCGAAGTGGGCATCACCTTATTGAGTTTTTGATGGGAAAATGGGGCTTAAAGTGTCTGAAGCTTCTTGATGGGTTTTCCTTCTTGCCACCTGACAAAGCATCACTGCTAAGTGGTAACATTCAATTGGCAGAGATAGGTCTTATCTCAAAAGATAATGCTTGAGTTGCTTAATCTTGAGACATGGTATCAAGCAGCAATATTTATGGATGGGGAACTGAGATGCCAACCGTTGAGGAATTTTCTAATATTATATTTTTCAATAGGTTTTTGAGTTATATTTGGACTTTTAATTTACCTTTAAGAATCTCTAGGTGTGTTCTTATACATGTATAAAACAAATGTTTACATGTTGATATTTGCAGTGCTGTCAAGTGGCTAGAGCCTGAAACCATATAATTAGTTCAAATTGATAGTTTAAGACATTTTTCTTTTGCGATGAAAACAGTTACATTCTTCACAACTATTCATCCTTATATCTCAAACTACATTTAGCAACCAACAATAGTTTTGGGATGAAAATGGGGAAAGTGGACGCTCAAACATGGAGTACGCCTAAAATATAGTCTGCATCACTAGTTTTCTGTGAAGCTACATTGCATATGTTCATTATTTAGCCTATCTggg

>Glyma.01g163200.3 sequence-type=transcript locus=Glyma.01g163200 ID=Glyma.01g163200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTTTCTCCCCTCTCTCTGCGTATATTGGCTTCATGTAACATTTTCGGCTGGAAATTTGGAGGTTTCAGTTTAACTCCTTCCGATGAGAGCCATGGAGGATTGGAATGATGAACAGTGTGATGACACCCTCACCATGACCACCGTTTCTCAGCACTTTTTCGGCGATGATTCTGAAACGCCAAGCTTCTCCATCTCCATCATCGAGAACATGAAGGAAGACTATGGCCTATTCGTGTGGCCCTGCAGCGTAGTTCTCGCCGAGTACATTTGGCAACACAAGCATCGATTTTCAGGAGCCACCGTTGTTGAGCTAGGTGCTGGAACTTCCCTGCCTGGCTTGGTTGCAGCAAAACTCGGTGCCCGTGTCACTCTTACTGATGACTCCACCAGATTAGAGGTGTTGGGATTGACATGGGGAGTTTGGGATTCATCCATATTCAGTTTACAGCCAACAATTATTCTAGGGGCTGATGTGCTGTACGATTCAAAAGCCTTTGATAACCTCTTTGCCACTGTGACTTTCCTGCTCCGAAATTCTCCTGGGTCAACTTTTATAACCTCATACCATAACCGAAGTGGGCATCACCTTATTGAGTTTTTGATGGGAAAATGGGGCTTAAAGTGTCTGAAGCTTCTTGATGGGTTTTCCTTCTTGCCACCTGACAAAGCATCACTGCTAAGTGGTAACATTCAATTGGCAGAGATAGGTCTTATCTCAAAAGATAATGCTTGAGTTGCTTAATCTTGAGACATGGTATCAAGCAGCAATATTTATGGATGGGGAACTGAGATGCCAACCGTTGAGGAATTTTCTAATATTATATTTTTCAATAGGTTTTTGAGTTATATTTGGACTTTTAATTTACCTTTAAGAATCTCTAGGTGTGTTCTTATACATGTATAAAACAAATGTTTACATGTTGATATTTGCAGTGCTGTCAAGTGGCTAGAGCCTGAAACCATATAATTAGTTCAAATTGATAGTTTAAGACATTTTTCTTTTGCGATGAAAACAGTTACATTCTTCACAACTATTCATCCTTATATCTCAAACTACATTTAGCAACCAACAATAGTTTTGGGATGAAAATGGGGAAAGTGGACGCTCAAACATGGAGTACGCCTAAAATATAGTCTGCATCACTAGTTTTCTGTGAAGCTACATTGCATATGTTCATTATTTAGCCTATCTggg

Coding sequences of Glyma.01g163200

Limit To All Plant Sequences

>Glyma.01g163200.1 sequence-type=CDS polypeptide=Glyma.01g163200.1.p locus=Glyma.01g163200 ID=Glyma.01g163200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGCCATGGAGGATTGGAATGATGAACAGTGTGATGACACCCTCACCATGACCACCGTTTCTCAGCACTTTTTCGGCGATGATTCTGAAACGCCAAGCTTCTCCATCTCCATCATCGAGAACATGAAGGAAGACTATGGCCTATTCGTGTGGCCCTGCAGCGTAGTTCTCGCCGAGTACATTTGGCAACACAAGCATCGATTTTCAGGAGCCACCGTTGTTGAGCTAGGTGCTGGAACTTCCCTGCCTGGCTTGGTTGCAGCAAAACTCGGTGCCCGTGTCACTCTTACTGATGACTCCACCAGATTAGAGGTGCTTGACAACATGAGAAGGGTTTGTGACTTGAACAAACTTGAGTGCAATGTGTTGGGATTGACATGGGGAGTTTGGGATTCATCCATATTCAGTTTACAGCCAACAATTATTCTAGGGGCTGATGTGCTGTACGATTCAAAAGCCTTTGATAACCTCTTTGCCACTGTGACTTTCCTGCTCCGAAATTCTCCTGGGTCAACTTTTATAACCTCATACCATAACCGAAGTGGGCATCACCTTATTGAGTTTTTGATGGGAAAATGGGGCTTAAAGTGTCTGAAGCTTCTTGATGGGTTTTCCTTCTTGCCACCTGACAAAGCATCACTGCTAAGTGGTAACATTCAATTGGCAGAGATAGGTCTTATCTCAAAAGATAATGCTTGA

>Glyma.01g163200.2 sequence-type=CDS polypeptide=Glyma.01g163200.2.p locus=Glyma.01g163200 ID=Glyma.01g163200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGCCATGGAGGATTGGAATGATGAACAGTGTGATGACACCCTCACCATGACCACCGTTTCTCAGCACTTTTTCGGCGATGATTCTGAAACGCCAAGCTTCTCCATCTCCATCATCGAGAACATGAAGGAAGACTATGGCCTATTCGTGTGGCCCTGCAGCGTAGTTCTCGCCGAGTACATTTGGCAACACAAGCATCGATTTTCAGGAGCCACCGTTGTTGAGCTAGGTGCTGGAACTTCCCTGCCTGGCTTGGTTGCAGCAAAACTCGGTGCCCGTGTCACTCTTACTGATGACTCCACCAGATTAGAGGTGCTTGACAACATGAGAAGGGTGTTGGGATTGACATGGGGAGTTTGGGATTCATCCATATTCAGTTTACAGCCAACAATTATTCTAGGGGCTGATGTGCTGTACGATTCAAAAGCCTTTGATAACCTCTTTGCCACTGTGACTTTCCTGCTCCGAAATTCTCCTGGGTCAACTTTTATAACCTCATACCATAACCGAAGTGGGCATCACCTTATTGAGTTTTTGATGGGAAAATGGGGCTTAAAGTGTCTGAAGCTTCTTGATGGGTTTTCCTTCTTGCCACCTGACAAAGCATCACTGCTAAGTGGTAACATTCAATTGGCAGAGATAGGTCTTATCTCAAAAGATAATGCTTGA

>Glyma.01g163200.3 sequence-type=CDS polypeptide=Glyma.01g163200.3.p locus=Glyma.01g163200 ID=Glyma.01g163200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGCCATGGAGGATTGGAATGATGAACAGTGTGATGACACCCTCACCATGACCACCGTTTCTCAGCACTTTTTCGGCGATGATTCTGAAACGCCAAGCTTCTCCATCTCCATCATCGAGAACATGAAGGAAGACTATGGCCTATTCGTGTGGCCCTGCAGCGTAGTTCTCGCCGAGTACATTTGGCAACACAAGCATCGATTTTCAGGAGCCACCGTTGTTGAGCTAGGTGCTGGAACTTCCCTGCCTGGCTTGGTTGCAGCAAAACTCGGTGCCCGTGTCACTCTTACTGATGACTCCACCAGATTAGAGGTGTTGGGATTGACATGGGGAGTTTGGGATTCATCCATATTCAGTTTACAGCCAACAATTATTCTAGGGGCTGATGTGCTGTACGATTCAAAAGCCTTTGATAACCTCTTTGCCACTGTGACTTTCCTGCTCCGAAATTCTCCTGGGTCAACTTTTATAACCTCATACCATAACCGAAGTGGGCATCACCTTATTGAGTTTTTGATGGGAAAATGGGGCTTAAAGTGTCTGAAGCTTCTTGATGGGTTTTCCTTCTTGCCACCTGACAAAGCATCACTGCTAAGTGGTAACATTCAATTGGCAGAGATAGGTCTTATCTCAAAAGATAATGCTTGA

Predicted protein sequences of Glyma.01g163200

Limit To All Plant Sequences

>Glyma.01g163200.1.p sequence-type=predicted peptide transcript=Glyma.01g163200.1 locus=Glyma.01g163200 ID=Glyma.01g163200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRAMEDWNDEQCDDTLTMTTVSQHFFGDDSETPSFSISIIENMKEDYGLFVWPCSVVLAEYIWQHKHRFSGATVVELGAGTSLPGLVAAKLGARVTLTDDSTRLEVLDNMRRVCDLNKLECNVLGLTWGVWDSSIFSLQPTIILGADVLYDSKAFDNLFATVTFLLRNSPGSTFITSYHNRSGHHLIEFLMGKWGLKCLKLLDGFSFLPPDKASLLSGNIQLAEIGLISKDNA*

>Glyma.01g163200.2.p sequence-type=predicted peptide transcript=Glyma.01g163200.2 locus=Glyma.01g163200 ID=Glyma.01g163200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRAMEDWNDEQCDDTLTMTTVSQHFFGDDSETPSFSISIIENMKEDYGLFVWPCSVVLAEYIWQHKHRFSGATVVELGAGTSLPGLVAAKLGARVTLTDDSTRLEVLDNMRRVLGLTWGVWDSSIFSLQPTIILGADVLYDSKAFDNLFATVTFLLRNSPGSTFITSYHNRSGHHLIEFLMGKWGLKCLKLLDGFSFLPPDKASLLSGNIQLAEIGLISKDNA*

>Glyma.01g163200.3.p sequence-type=predicted peptide transcript=Glyma.01g163200.3 locus=Glyma.01g163200 ID=Glyma.01g163200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRAMEDWNDEQCDDTLTMTTVSQHFFGDDSETPSFSISIIENMKEDYGLFVWPCSVVLAEYIWQHKHRFSGATVVELGAGTSLPGLVAAKLGARVTLTDDSTRLEVLGLTWGVWDSSIFSLQPTIILGADVLYDSKAFDNLFATVTFLLRNSPGSTFITSYHNRSGHHLIEFLMGKWGLKCLKLLDGFSFLPPDKASLLSGNIQLAEIGLISKDNA*

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