SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35830.1 | AT | aconitase 1 | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0003994 | GO-mf | aconitate hydratase activity | EnsemblGenomes | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| KOG0452 | KOG | RNA-binding translational regulator IRP (aconitase superfamily) | JGI | N/A | IEA |
| PTHR11670 | Panther | ACONITASE | JGI | N/A | IEA |
| PTHR11670:SF1 | Panther | IRON REGULATORY PROTEIN 1A-RELATED | JGI | N/A | IEA |
| PF00330 | PFAM | Aconitase family (aconitate hydratase) | JGI | N/A | IEA |
| PF00694 | PFAM | Aconitase C-terminal domain | JGI | N/A | IEA |
| GLYOXYLATE-BYPASS | SoyCyc9 | glyoxylate cycle | Plant Metabolic Network | ISS | |
| PWY-5464 | SoyCyc9 | superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | Plant Metabolic Network | ISS | |
| PWY-561 | SoyCyc9 | superpathway of glyoxylate cycle and fatty acid degradation | Plant Metabolic Network | ISS | |
| PWY-5690 | SoyCyc9 | TCA cycle II (plants and fungi) | Plant Metabolic Network | ISS | |
| PWY-6549 | SoyCyc9 | L-glutamine biosynthesis III | Plant Metabolic Network | ISS | |
| GN7V-42623 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
|
Glyma.01g162800 not represented in the dataset |
Glyma.01g162800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.11g080600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g36750 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g162800.1 sequence-type=CDS polypeptide=Glyma.01g162800.1.p locus=Glyma.01g162800 ID=Glyma.01g162800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGACTGAGAACCCTTTCAATAGCATTTTGAGGACGCTCGAGAAGCCCGGCGGCGCTGGCGAGTTTGGAAAGTACTTTAGCTTGCCCGCTCTCAACGATCCTAGAATCGATAGACTTCCTTACTCTGTGAGGATACTTTTGGAATCTGCAATCCGTAACTGTGATGAGTTTCAAGTTAAGAGTAACGACATTGAAAAAATTATTGATTGGGAGAATACCTCTCCCAAGCTGGTGGAGATTCCATTCAAGCCAGCTAGAGTGCTTCTGCAGGACTTTACTGGGGTGCCTGCTGTGGTTGATCTTGCTTGCATGCGAGATGCAATGAACAAACTTGGTGGTGATTCTAATAAAATTAACCCCTTGGTACCAGTTGATCTTGTCATTGATCACTCTGTTCAAGTTGATGTGGCAAGATCAGAAAATGCTGTCCAGGCAAATATGGAACTTGAATTCCAAAGAAACAAGGAAAGATTTGGTTTCCTCAAATGGGGTTCTAATGCATTCAATAATATGCTTGTCGTTCCTCCTGGATCAGGGATAGTTCATCAGGTTAATTTAGAATACCTTGGTAGAGTTGTGTTCAACACAAATGGTGTGCTTTATCCAGACAGCGTTGTCGGAACTGATTCACACACTACTATGATAGATGGCCTGGGTGTTGCTGGATGGGGAGTTGGTGGAATAGAAGCAGAAGCTGCAATGCTTGGCCAGCCCATGAGCATGGTCCTACCGGGTGTTGTTGGGTTCAAATTATTAGGCAAACTACGAGATGGTGTCACAGCTACTGACTTGGTGTTGACTGTTACTCAAATGCTAAGAAAGCATGGGGTTGTTGGCAAGTTTGTAGAGTTTTATGGGGAAGGCATGAGTGAACTGTCTTTGGCAGATCGTGCCACTATAGCAAACATGTCTCCTGAGTATGGTGCAACCATGGGCTTCTTTCCTGTGGATCATGTCACTTTGCAATATTTGAGACTGACTGGCAGAAGTGATGAGACTGTTTCTATGATAGAATCCTATTTACGAGCAAATAAGATGTTTGTGGATTATAGCGAGCCCCAAGTGGAGAGAGTGTACTCATCCTATTTGGAACTCAATCTTGAGGATGTAGAGCCCTGTGTCTCAGGTCCAAAAAGGCCTCACGACCGTGTCCCTTTGAGAGAAATGAAGGTAGACTGGCATGCCTGCCTCAACAATAAAGTTGGATTTAAGGGTTTTGCTGTATCAAAAGAATCTCAGAATAAGGTTGCAGAGTTCACATTCCAAGGGACACCAGCACATCTTAGGCATGGTGATGTTGTTATAGCTGCTATCACCAGTTGTACAAATACTTCAAATCCTAGCGTAATGCTTGGAGCTGCATTGGTTGCAAAGAAAGCATGTGAATTGGGATTGCAGGTGAAGCCATGGATTAAAACAAGTCTTGCCCCAGGTTCTGGTGTTGTAACTAAGTATTTGCAGAGGAGTGGCTTGCAGAAGTATTTGAATGAGCTAGGGTTTAATATAGTTGGGTATGGATGCACCACATGCATTGGAAATTCAGGGGATATTAATGAAGCTGTTGCATCTGCGATTACCGAAAATGATATAGTAGCTGCAGCTGTATTGTCTGGAAATAGGAACTTTGAGGGCCGAGTTCACCCATTAACAAGAGCTAATTATCTTGCTTCTCCTCCTCTTGTTGTTGCCTATGCCCTTGCTGGCACAGTGGACATTGACTTTGACACTGAACCCATTGGGATAGGGAAGGATGGAACAGAGATCTTCTTCAAGGATATTTGGCCATCCAGTGAAGAAATAGCAAATGTTGTACAATCAAGTGTGCTGCCTGATATGTTTAGGGACACATATAATGCAATCACCCAAGGGAATCCCATGTGGAATAATTTATCTGTTCCAACGGGCACTCTTTATGCTTGGGACCCTACATCGACTTATATTCATGAGCCACCTTATTTTAGAGATATGAGCATGTCTCCCCCAGGCTCTCATGGAGTGAAGGATGCTTACTGTTTGCTCAACTTTGGAGACAGTATCACAACTGACCACATCTCTCCAGCTGGCAGCATACATAAGGACAGTCCTGCGGCCAGATACCTTATAGAACGTGGGGTTGATAGACGGGACTTCAACTCCTATGGAAGTCGCCGTGGTAATGATGAGGTGATGGCCCGAGGAACGTTTGCCAATATTCGCATTGTCAACAAATTTTTGAATGGAGAAGTTGGACCTAAAACTATTCATATTCCTTCTGGGGAGAAGTTGTCAGTCTTTGACGTTGCAGAGAAATACAAGAGTGAAGGGCATGATATGATTATCTTGGCTGGTGCTGAGTATGGGAGTGGAAGCTCTCGTGATTGGGCTGCAAAGGGGCCAATGCTACTGGGCGTGAAAGCTGTCATAGCAAAAAGTTTTGAAAGGATTCACCGAAGTAATTTGGTGGGAATGGGTATCATTCCTTTGTGTTTTAAGCCCGGGGAGGATGCTGATTCTCTTGGATTAACTGGTCAAGAACGTTACACCATTGATCTACCAAGCAATGTGAATGAAATACGACCCGGTCAAGATGTCACAGTGGTGACAGACACCGGGAAATCATTTGTATCTACATTGAGATTTGATACTGAGGTTGAACTAGCTTACTTCAACCATGGAGGTATCTTACAATATGTCATCAGAAACTTGATCAATGCTAAACATTGA
>Glyma.01g162800.1.p sequence-type=predicted peptide transcript=Glyma.01g162800.1 locus=Glyma.01g162800 ID=Glyma.01g162800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATENPFNSILRTLEKPGGAGEFGKYFSLPALNDPRIDRLPYSVRILLESAIRNCDEFQVKSNDIEKIIDWENTSPKLVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFGFLKWGSNAFNNMLVVPPGSGIVHQVNLEYLGRVVFNTNGVLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLLGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLRLTGRSDETVSMIESYLRANKMFVDYSEPQVERVYSSYLELNLEDVEPCVSGPKRPHDRVPLREMKVDWHACLNNKVGFKGFAVSKESQNKVAEFTFQGTPAHLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLQVKPWIKTSLAPGSGVVTKYLQRSGLQKYLNELGFNIVGYGCTTCIGNSGDINEAVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDTEPIGIGKDGTEIFFKDIWPSSEEIANVVQSSVLPDMFRDTYNAITQGNPMWNNLSVPTGTLYAWDPTSTYIHEPPYFRDMSMSPPGSHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAARYLIERGVDRRDFNSYGSRRGNDEVMARGTFANIRIVNKFLNGEVGPKTIHIPSGEKLSVFDVAEKYKSEGHDMIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADSLGLTGQERYTIDLPSNVNEIRPGQDVTVVTDTGKSFVSTLRFDTEVELAYFNHGGILQYVIRNLINAKH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
