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Report for Sequence Feature Glyma.01g162100

Feature Type:gene_model
Chromosome:Gm01
Start:50010865
stop:50019215
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g162100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35790.2AT phospholipase D delta JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0016042GO-bp lipid catabolic process EnsemblGenomesN/AIEA
GO:0046470GO-bp phosphatidylcholine metabolic process EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0004630GO-mf phospholipase D activity EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0070290GO-mf N-acylphosphatidylethanolamine-specific phospholipase D activity EnsemblGenomesN/AIEA
KOG1329 KOG Phospholipase D1 JGI N/AIEA
PTHR18896Panther PHOSPHOLIPASE D JGI N/AIEA
PTHR18896:SF13Panther JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA
PF00614PFAM Phospholipase D Active site motif JGI N/AIEA
PF12357PFAM Phospholipase D C terminal JGI N/AIEA
LIPASYN-PWYSoyCyc9 phospholipases Plant Metabolic Network ISS
PWY-3561SoyCyc9 choline biosynthesis III Plant Metabolic Network ISS
PWY-4762SoyCyc9 superpathway of choline biosynthesis Plant Metabolic Network ISS
PWY-7039SoyCyc9 phosphatidate metabolism, as a signaling molecule Plant Metabolic Network ISS
GN7V-44433SoyCyc9-rxn phospholipase D Plant Metabolic Network ISS

Proteins Associated with Glyma.01g162100
LocusGene SymbolProtein Name
C2-1 C2 domain containing protein gene 1

Expression Patterns of Glyma.01g162100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g162100
ParalogEvidenceComments
Glyma.11g081500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g162100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g36680 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g162100
>Glyma.01g162100.2 sequence-type=transcript locus=Glyma.01g162100 ID=Glyma.01g162100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCCTAATTCAAAACGACcacttccacgtgacttcacttccttcgtttcacGCTATACCAAACCTTCTCTTCTACACTAAAAGCCCCCGTTTCGCTCCCGGGCGCAAATTCAAAACAATACTCTCGGCGCACGGGATCACTCACTCCCATGGCGGACACTGGCGGCGGCGACGACAATGGCGTTACCTATCTCCACGGCGACCTCGATTTGAAAATCATCGAGGCGCGCCACTTGCCCAACATGGACATCTTCTCCGAGCGTCTCCGCCGCTGCGTCACAGCCTGCGACACTATCAAATTCCACTCCGAGGCTCCCGCCGGCGGCGGCGGAGCCGGCCAGCGGAAGCACCACCATCCGAGGATCATCACGAGCGATCCGTACGTCACCGTTTCGGTGCCGCAAGCCACGGTGGCACGCACGCGCGTGCTGAAGAACTCGCCGAACCCTGTGTGGGAGGAACAGTTCAACATCCCGCTCGCGCATCCCGTGGTGGATTTGGAGTTTCGCGTCAAGGACGACGACGTTTTCGGCGCGCAGACCATGGGAACGGTCAAGGTTCCGGCGCGGCGGATTGCCACCGGAGCGAAGATTTCCGAGTGGTTTCCGATTCTGTTGCCGTCCGGGAAGCCGCCGAAGCCGGACACGGCGCTGCACGTGGAGATGAAATTCACTCCGGTGTGGGAGAATTTACTGTACCAGCGAGGCATTGCGGCGGATCCCGAACACAACGGCGTGAGGCACACGTATTTTCCGGTGAGGAAGGGGAGTTCGGTGAGGTTGTACCAGGACGCGCATTGTACCGAATCTGGTGAAGGGAAGTTACCGGAGATTAAGTTGGAGAATGGAAATGTTTATAGACACGAGAAGTGTTGGGAGGATATTTGTTATGCTATATCTGAGGCTCATCACATGGTGTATTTGGTGGGTTGGTCGATTTATCATAAGGTGAGGCTCGTTAGAGAGCCTACTAGGCCGTTGCCGCGCGGTGGCGATTTGACGCTTGGTGAGTTGCTTAAGTATAAGTCTGAGGAAGGGGTGAGAGTGTTGTTGCTGGTTTGGGATGATAAAACTTCGCATGATAAGGTTTTCCTCAAGACGGCTGGTGTGATGGGGACTCATGATGAGGAAACCAGGAAGTTTTTTAAGCATTCTTCTGTTATGTGTGTTCTGTCGCCTCGGTATGCCAGCAATAAAATGAGCTTCTTGAAGCAACAGGTTGTTGGAACGGTCTTCACACACCACCAAAAATGTGTGATTGTGGACACACAGGCTGCTGGTAATAACCGGAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGTCGCTATGACACACCCGAGCATCGTCTGTTTCGTAATCTTGACGATGTATTTGATGGTGATTTCCACAATCCTACATTTTCTGCTGGAACAAGAGTTCCTAGACAACCATGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATGTTCTTATTAATTTTGAGCAGCGATGGAGAAAAGCAACTAAGTGGAAAGAGTTTGCGATCCTTTTCAAAAAATCCTCTCAATGGCATGACGATGCTTTAATAAGAATAGAACGCATCTCATGGATATTAAGTCCTTCTGGTGCTGCTACCTTAAAGGATAAATCGGATGATTATACTGTTCCAGAGGATGACCCTTTAGTATGGGTTTCTAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAACGTGTTGATGTTGCTCTGTCCCAGAATCTTATCTGTGCTAAAAATTTGGTTATAGACAAAAGCATTCAAACAGCATACATTCAAGCGATCAGATCTGCTCAACACTTTATTTATATTGAAAACCAATACTTCATTGGATCATCGTATGCATGGCCAGCTTATAAAGATGCAGGGGCTGATAATCTCATCCCAATGGAATTGGCACTGAAAATTGCTAGTAAAATTAGAGCTAAGGAGAGATTTGCTGTCTACATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAAACGATGCAAATGATGTATGATGCAGTTGCTAGAGAATTGAAATCAATGCAGCTTACTGATGTGCACCCACAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAACACTTTAATGAAGATAGTTCAAGCACAAATGGTGCACAGGGATGATCGTCGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAACCCCATTACACGTGGTCAGCAAAGAAAAGACATCCACATGGCCAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCATGTTAGATGAAACTTTTGAAGAACCAGAGAGATTGGAGTGTGTGCATAAAGTGAATAAAATTGCAGACAACAATTGGAAATTATTCGCTTCTGAAGATTTCTCACTTTTGCAGGGACATCTTCTTAAGTATCCTGTACAGGTAGATTCCGATGGGAAGATTAGATCCCTACCTGACTGTGAGAATTTCCCCGATGCCGGGGGTAAGATACTGGGGGCTCACTCCACGACAATTCCAGATATCCTAACAACTTAAACTCCTGAATTCATGTCGTTGAAGATTTGTAAAGATTGTGATTTGTTGCCTGCCCCTTCCTGAGAAAGAGGACAGAAAAAGAAGTTGGGGGTAAAGTTATGTAGCTTTCTGTACTTAAAAATGATTGTTCAGATCACTTGTAAATCTTTCACACAGAATTGATTCATATTTTGAAAGGATCACCAGTTTATAGATATCCGTTACCCTGTCCTCCTTTATTTGGTCATA
Coding sequences of Glyma.01g162100
>Glyma.01g162100.1 sequence-type=CDS polypeptide=Glyma.01g162100.1.p locus=Glyma.01g162100 ID=Glyma.01g162100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGACACTGGCGGCGGCGACGACAATGGCGTTACCTATCTCCACGGCGACCTCGATTTGAAAATCATCGAGGCGCGCCACTTGCCCAACATGGACATCTTCTCCGAGCGTCTCCGCCGCTGCGTCACAGCCTGCGACACTATCAAATTCCACTCCGAGGCTCCCGCCGGCGGCGGCGGAGCCGGCCAGCGGAAGCACCACCATCCGAGGATCATCACGAGCGATCCGTACGTCACCGTTTCGGTGCCGCAAGCCACGGTGGCACGCACGCGCGTGCTGAAGAACTCGCCGAACCCTGTGTGGGAGGAACAGTTCAACATCCCGCTCGCGCATCCCGTGGTGGATTTGGAGTTTCGCGTCAAGGACGACGACGTTTTCGGCGCGCAGACCATGGGAACGGTCAAGGTTCCGGCGCGGCGGATTGCCACCGGAGCGAAGATTTCCGAGTGGTTTCCGATTCTGTTGCCGTCCGGGAAGCCGCCGAAGCCGGACACGGCGCTGCACGTGGAGATGAAATTCACTCCGGTGTGGGAGAATTTACTGTACCAGCGAGGCATTGCGGCGGATCCCGAACACAACGGCGTGAGGCACACGTATTTTCCGGTGAGGAAGGGGAGTTCGGTGAGGTTGTACCAGGACGCGCATTGTACCGAATCTGGTGAAGGGAAGTTACCGGAGATTAAGTTGGAGAATGGAAATGTTTATAGACACGAGAAGTGTTGGGAGGATATTTGTTATGCTATATCTGAGGCTCATCACATGGTGTATTTGGTGGGTTGGTCGATTTATCATAAGGTGAGGCTCGTTAGAGAGCCTACTAGGCCGTTGCCGCGCGGTGGCGATTTGACGCTTGGTGAGTTGCTTAAGTATAAGTCTGAGGAAGGGGTGAGAGTGTTGTTGCTGGTTTGGGATGATAAAACTTCGCATGATAAGGTTTTCCTCAAGACGGCTGGTGTGATGGGGACTCATGATGAGGAAACCAGGAAGTTTTTTAAGCATTCTTCTGTTATGTGTGTTCTGTCGCCTCGGTATGCCAGCAATAAAATGAGCTTCTTGAAGCAACAGGTTGTTGGAACGGTCTTCACACACCACCAAAAATGTGTGATTGTGGACACACAGGCTGCTGGTAATAACCGGAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGTCGCTATGACACACCCGAGCATCGTCTGTTTCGTAATCTTGACGATGTATTTGATGGTGATTTCCACAATCCTACATTTTCTGCTGGAACAAGAGTTCCTAGACAACCATGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATGTTCTTATTAATTTTGAGCAGCGATGGAGAAAAGCAACTAAGTGGAAAGAGTTTGCGATCCTTTTCAAAAAATCCTCTCAATGGCATGACGATGCTTTAATAAGAATAGAACGCATCTCATGGATATTAAGTCCTTCTGGTGCTGCTACCTTAAAGGATAAATCGGATGATTATACTGTTCCAGAGGATGACCCTTTAGTATGGGTTTCTAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAACGTGTTGATGTTGCTCTGTCCCAGAATCTTATCTGTGCTAAAAATTTGGTTATAGACAAAAGCATTCAAACAGCATACATTCAAGCGATCAGATCTGCTCAACACTTTATTTATATTGAAAACCAATACTTCATTGGATCATCGTATGCATGGCCAGCTTATAAAGATGCAGGGGCTGATAATCTCATCCCAATGGAATTGGCACTGAAAATTGCTAGTAAAATTAGAGCTAAGGAGAGATTTGCTGTCTACATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAAACGATGCAAATGATGTATGATGCAGTTGCTAGAGAATTGAAATCAATGCAGCTTACTGATGTGCACCCACAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAACACTTTAATGAAGATAGTTCAAGCACAAATGGTGCACAGGTCTCAACAGCATATAAATATCGCCGTTTTATGATTTATGTGCATGCTAAAGGGATGATCGTCGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAACCCCATTACACGTGGTCAGCAAAGAAAAGACATCCACATGGCCAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCATGTTAGATGAAACTTTTGAAGAACCAGAGAGATTGGAGTGTGTGCATAAAGTGAATAAAATTGCAGACAACAATTGGAAATTATTCGCTTCTGAAGATTTCTCACTTTTGCAGGGACATCTTCTTAAGTATCCTGTACAGGTAGATTCCGATGGGAAGATTAGATCCCTACCTGACTGTGAGAATTTCCCCGATGCCGGGGGTAAGATACTGGGGGCTCACTCCACGACAATTCCAGATATCCTAACAACTTAA

>Glyma.01g162100.2 sequence-type=CDS polypeptide=Glyma.01g162100.2.p locus=Glyma.01g162100 ID=Glyma.01g162100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGACACTGGCGGCGGCGACGACAATGGCGTTACCTATCTCCACGGCGACCTCGATTTGAAAATCATCGAGGCGCGCCACTTGCCCAACATGGACATCTTCTCCGAGCGTCTCCGCCGCTGCGTCACAGCCTGCGACACTATCAAATTCCACTCCGAGGCTCCCGCCGGCGGCGGCGGAGCCGGCCAGCGGAAGCACCACCATCCGAGGATCATCACGAGCGATCCGTACGTCACCGTTTCGGTGCCGCAAGCCACGGTGGCACGCACGCGCGTGCTGAAGAACTCGCCGAACCCTGTGTGGGAGGAACAGTTCAACATCCCGCTCGCGCATCCCGTGGTGGATTTGGAGTTTCGCGTCAAGGACGACGACGTTTTCGGCGCGCAGACCATGGGAACGGTCAAGGTTCCGGCGCGGCGGATTGCCACCGGAGCGAAGATTTCCGAGTGGTTTCCGATTCTGTTGCCGTCCGGGAAGCCGCCGAAGCCGGACACGGCGCTGCACGTGGAGATGAAATTCACTCCGGTGTGGGAGAATTTACTGTACCAGCGAGGCATTGCGGCGGATCCCGAACACAACGGCGTGAGGCACACGTATTTTCCGGTGAGGAAGGGGAGTTCGGTGAGGTTGTACCAGGACGCGCATTGTACCGAATCTGGTGAAGGGAAGTTACCGGAGATTAAGTTGGAGAATGGAAATGTTTATAGACACGAGAAGTGTTGGGAGGATATTTGTTATGCTATATCTGAGGCTCATCACATGGTGTATTTGGTGGGTTGGTCGATTTATCATAAGGTGAGGCTCGTTAGAGAGCCTACTAGGCCGTTGCCGCGCGGTGGCGATTTGACGCTTGGTGAGTTGCTTAAGTATAAGTCTGAGGAAGGGGTGAGAGTGTTGTTGCTGGTTTGGGATGATAAAACTTCGCATGATAAGGTTTTCCTCAAGACGGCTGGTGTGATGGGGACTCATGATGAGGAAACCAGGAAGTTTTTTAAGCATTCTTCTGTTATGTGTGTTCTGTCGCCTCGGTATGCCAGCAATAAAATGAGCTTCTTGAAGCAACAGGTTGTTGGAACGGTCTTCACACACCACCAAAAATGTGTGATTGTGGACACACAGGCTGCTGGTAATAACCGGAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGTCGCTATGACACACCCGAGCATCGTCTGTTTCGTAATCTTGACGATGTATTTGATGGTGATTTCCACAATCCTACATTTTCTGCTGGAACAAGAGTTCCTAGACAACCATGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATGTTCTTATTAATTTTGAGCAGCGATGGAGAAAAGCAACTAAGTGGAAAGAGTTTGCGATCCTTTTCAAAAAATCCTCTCAATGGCATGACGATGCTTTAATAAGAATAGAACGCATCTCATGGATATTAAGTCCTTCTGGTGCTGCTACCTTAAAGGATAAATCGGATGATTATACTGTTCCAGAGGATGACCCTTTAGTATGGGTTTCTAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAACGTGTTGATGTTGCTCTGTCCCAGAATCTTATCTGTGCTAAAAATTTGGTTATAGACAAAAGCATTCAAACAGCATACATTCAAGCGATCAGATCTGCTCAACACTTTATTTATATTGAAAACCAATACTTCATTGGATCATCGTATGCATGGCCAGCTTATAAAGATGCAGGGGCTGATAATCTCATCCCAATGGAATTGGCACTGAAAATTGCTAGTAAAATTAGAGCTAAGGAGAGATTTGCTGTCTACATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAAACGATGCAAATGATGTATGATGCAGTTGCTAGAGAATTGAAATCAATGCAGCTTACTGATGTGCACCCACAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAACACTTTAATGAAGATAGTTCAAGCACAAATGGTGCACAGGGATGA
Predicted protein sequences of Glyma.01g162100
>Glyma.01g162100.1.p sequence-type=predicted peptide transcript=Glyma.01g162100.1 locus=Glyma.01g162100 ID=Glyma.01g162100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADTGGGDDNGVTYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFHSEAPAGGGGAGQRKHHHPRIITSDPYVTVSVPQATVARTRVLKNSPNPVWEEQFNIPLAHPVVDLEFRVKDDDVFGAQTMGTVKVPARRIATGAKISEWFPILLPSGKPPKPDTALHVEMKFTPVWENLLYQRGIAADPEHNGVRHTYFPVRKGSSVRLYQDAHCTESGEGKLPEIKLENGNVYRHEKCWEDICYAISEAHHMVYLVGWSIYHKVRLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFLKTAGVMGTHDEETRKFFKHSSVMCVLSPRYASNKMSFLKQQVVGTVFTHHQKCVIVDTQAAGNNRKITAFIGGLDLCDGRYDTPEHRLFRNLDDVFDGDFHNPTFSAGTRVPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATKWKEFAILFKKSSQWHDDALIRIERISWILSPSGAATLKDKSDDYTVPEDDPLVWVSSEDDPENWHVQIFRSIDSGSLKGFPKRVDVALSQNLICAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPAYKDAGADNLIPMELALKIASKIRAKERFAVYIVLPMWPEGDPKTGAMQEILFWQGQTMQMMYDAVARELKSMQLTDVHPQDYLNFYCLGNREHFNEDSSSTNGAQVSTAYKYRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHYTWSAKKRHPHGQIYGYRMSLWGEHLGMLDETFEEPERLECVHKVNKIADNNWKLFASEDFSLLQGHLLKYPVQVDSDGKIRSLPDCENFPDAGGKILGAHSTTIPDILTT*

>Glyma.01g162100.2.p sequence-type=predicted peptide transcript=Glyma.01g162100.2 locus=Glyma.01g162100 ID=Glyma.01g162100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADTGGGDDNGVTYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFHSEAPAGGGGAGQRKHHHPRIITSDPYVTVSVPQATVARTRVLKNSPNPVWEEQFNIPLAHPVVDLEFRVKDDDVFGAQTMGTVKVPARRIATGAKISEWFPILLPSGKPPKPDTALHVEMKFTPVWENLLYQRGIAADPEHNGVRHTYFPVRKGSSVRLYQDAHCTESGEGKLPEIKLENGNVYRHEKCWEDICYAISEAHHMVYLVGWSIYHKVRLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFLKTAGVMGTHDEETRKFFKHSSVMCVLSPRYASNKMSFLKQQVVGTVFTHHQKCVIVDTQAAGNNRKITAFIGGLDLCDGRYDTPEHRLFRNLDDVFDGDFHNPTFSAGTRVPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATKWKEFAILFKKSSQWHDDALIRIERISWILSPSGAATLKDKSDDYTVPEDDPLVWVSSEDDPENWHVQIFRSIDSGSLKGFPKRVDVALSQNLICAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPAYKDAGADNLIPMELALKIASKIRAKERFAVYIVLPMWPEGDPKTGAMQEILFWQGQTMQMMYDAVARELKSMQLTDVHPQDYLNFYCLGNREHFNEDSSSTNGAQG*






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