Glyma.01g160300

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Report for Sequence Feature Glyma.01g160300

Feature Type:	gene_model
Chromosome:	Gm01
Start:	49878554
stop:	49885072
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g160300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80740.1	AT	chromomethylase 1	JGI	N/A	IEA
GO:0006306	GO-bp	DNA methylation	JGI	N/A	IEA
GO:0032259	GO-bp	methylation	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0003682	GO-mf	chromatin binding	EnsemblGenomes	N/A	IEA
GO:0008168	GO-mf	methyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0008168	GO-mf	methyltransferase activity	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
PTHR10629	Panther	CYTOSINE-SPECIFIC METHYLTRANSFERASE	JGI	N/A	IEA
PF00145	PFAM	C-5 cytosine-specific DNA methylase	JGI	N/A	IEA
PF00385	PFAM	Chromo (CHRromatin Organisation MOdifier) domain	JGI	N/A	IEA
PF01426	PFAM	BAH domain	JGI	N/A	IEA

Expression Patterns of Glyma.01g160300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g160300 not represented in the dataset	Glyma.01g160300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01g160300

Paralog	Evidence	Comments
Glyma.11g083600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g160300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g36500	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g160300

Limit To All Plant Sequences

>Glyma.01g160300.2 sequence-type=transcript locus=Glyma.01g160300 ID=Glyma.01g160300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCCCCCTTCTCTTTTCCTCACTCACTTTTTGTCTGCATCTCTTCTCCGCTTGTCCCTCTATCCATCACTGGAAGCAGCGATACGCTGCCATGGCTAAAAAACGCAGCGCATCAGACGCCACCGATGATGCACAAAACGACACCGTATCGCTGCTTCCCTCCCAACGCAAGAAGCCCAAGCACTCTGCTCCTAACCCCGACGCCTGCTTCGTCGGAAAGCCCATTCCTTCTGCCGAGGCCCGCGCCAAATGGCCCCACCGATACCCCTCCGAGGTGAAAAAGAAAGCTCCAGCTAGAAGCTCAGAAGAGGTTACGAGTGAAAACAGTGAGGTTATGCTGGCTAGGTGTCATTATCGTCAAGCTAAAGTAGATGGAGTTGTTTATAACCTCTATGATGATGCTTATGTTAAGGCCGAAGACGGTAAACCAGATTATATTGCACGAATCGTTGAGATGTTTGAGACTGTTGATAAGGAACAATGTTTTATGGCTCAGTGGTTCTACAGGGCCGAAGACACTGTGATAAAAAATCACGGTGATCTTGTTGACAAGAAGCGGGTTTTTATATCTGATGTGAAGGATGTAAATCCCCTTGACTGTATTGTTTCAAAAGTCAAAATTTTCAAAAAAAACCCAAGTGTAGATTTGGCTTCAAAGAAGGCAAAATTGCCTTTTTGTGATTACTATTATGACATGAAGTACACTGTGCCATATCTAACATTTTCCAACCTAGTCAATGAAACAGTTAAAACCGAGAGTGATGCATCTTCCACAATTTCTAGTGAATCTGGATCCATTGGTTGCGTTAATAATGCTAATCTGGCAAAGAGAAAGACTACTCAAAATAATAGTTCTGGTTCCTCGCAGTGGACTTTGCTAGACTTGTATTCTGGTTGTGGAGCCATGTCCACAGGGCTTTGTTTGGGTGCATCCTTGGCTGGAATAAAACTTGTCACAATGTGGGCTGTGGACATTAATGCACATGCATGCAAAAGTTTGAAGCTGAACCACCCTGAAACTCATGTTAGAAATGAACCAGCTGAAGACTTCTTAAACCTAATAAAAGCTTGGGCCAAGCTTTGTGAAGAGTTTGCATTATTAGGATCAGAACGGTCAGATTCCGATCCAGACATGGATGAAGATGAGAATGAAGCTGTGCAAAAAGAAGAGTCAGGAAATCAATCTGACTTGGAGGAATTTGAAGTAGAAAAATTACTTGCTGTGTGCTATGGTGATCCAAACGGCGTCAAAAAACCAGGACTATATTTTAAAGTGCGTTGGCTGGGTTATGATTCCAGTTATGACACATGGGAGCCAATAGATGGATTGAGTGATTGCAAGGAAGTTATGAAAGATTTTGTGACAAAAGGCTACAAGAAAAGATTATTGCCTCTTCCTGGTGATGCTAACTTTATTTGTGGTGGACCCCCGTGTCAAGGAGTAAGTGGTTTCAACCGCTTCAGGAACGCAGAAGCTCCATTAGAGGATACAAAGAATAAGCAGTTGCTTGTTTACATGGATATTATTGATTTTTTGAAGCCAAAATATGTCCTCATGGAGAATGTCGTTGATATTTTGAAGTTTTCTGGTGGTTATCTGGGGCGTTATGCCATAGGCCGTCTTGTAGCTATGAATTATCAAGCAAGAATGGGCATGATGGCAGCAGGGTCTTATGGCCTTCCACAATTTCGTATGCGTGTTTTCCTTTGGGGAGCTCGTCCTACTGAGCAATTGCCTCCATATCCGTTACCAACGCATGAGGTGGTGTCAAGAGGTTTTGTTCCCACTGAGTTTGAAGTAAGGACTAATAGATTAAGACAATATTTCTCCATTTTCCTCAAGAAGCATTGTCTTTGATTTTAATCACCGGGATCTGATTGTTGTTGTCATAATGCAGGAAATTACAGTAGCTTATGATAAAAAGGATACCTGTCAGCTGGCTGGTGCTCTTTTACTTGATGATGCAATATCAGATCTCCCACCTGTTACAAATGATGAGAACCAGGATGAAAGGAACTATGGAGCTCCTGCTCGAACTGAGTTTCAAAGATATATTAGATTGAAGAAAAACGGTTAGCTTTTGTATTTGTTTTTGTCTTTTAAAGCATGCTTATGTTTATTCTTTGCATCAAGGTCTTTGCCTTTGCCTGTGTGTGAAACTAGATATCTATGAGCTTCTTTAAAACATAGTTGAATATTTTGACATGCTCTACGTTGCTTTTGCTATGTCTAGAATTTTGTTTTGGTGGTTGACTGTAGTTTGATGGGGTAATAATATTCACATTGCTTTATTCCCATGCATCAATTGCATAATACTACCGTGCAAAATGGATATTGACATTATACGATCTCTG

Coding sequences of Glyma.01g160300

Limit To All Plant Sequences

>Glyma.01g160300.1 sequence-type=CDS polypeptide=Glyma.01g160300.1.p locus=Glyma.01g160300 ID=Glyma.01g160300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAAAAACGCAGCGCATCAGACGCCACCGATGATGCACAAAACGACACCGTATCGCTGCTTCCCTCCCAACGCAAGAAGCCCAAGCACTCTGCTCCTAACCCCGACGCCTGCTTCGTCGGAAAGCCCATTCCTTCTGCCGAGGCCCGCGCCAAATGGCCCCACCGATACCCCTCCGAGGTGAAAAAGAAAGCTCCAGCTAGAAGCTCAGAAGAGGTTACGAGTGAAAACAGTGAGGTTATGCTGGCTAGGTGTCATTATCGTCAAGCTAAAGTAGATGGAGTTGTTTATAACCTCTATGATGATGCTTATGTTAAGGCCGAAGACGGTAAACCAGATTATATTGCACGAATCGTTGAGATGTTTGAGACTGTTGATAAGGAACAATGTTTTATGGCTCAGTGGTTCTACAGGGCCGAAGACACTGTGATAAAAAATCACGGTGATCTTGTTGACAAGAAGCGGGTTTTTATATCTGATGTGAAGGATGTAAATCCCCTTGACTGTATTGTTTCAAAAGTCAAAATTTTCAAAAAAAACCCAAGTGTAGATTTGGCTTCAAAGAAGGCAAAATTGCCTTTTTGTGATTACTATTATGACATGAAGTACACTGTGCCATATCTAACATTTTCCAACCTAGTCAATGAAACAGTTAAAACCGAGAGTGATGCATCTTCCACAATTTCTAGTGAATCTGGATCCATTGGTTGCGTTAATAATGCTAATCTGGCAAAGAGAAAGACTACTCAAAATAATAGTTCTGGTTCCTCGCAGTGGACTTTGCTAGACTTGTATTCTGGTTGTGGAGCCATGTCCACAGGGCTTTGTTTGGGTGCATCCTTGGCTGGAATAAAACTTGTCACAATGTGGGCTGTGGACATTAATGCACATGCATGCAAAAGTTTGAAGCTGAACCACCCTGAAACTCATGTTAGAAATGAACCAGCTGAAGACTTCTTAAACCTAATAAAAGCTTGGGCCAAGCTTTGTGAAGAGTTTGCATTATTAGGATCAGAACGGTCAGATTCCGATCCAGACATGGATGAAGATGAGAATGAAGCTGTGCAAAAAGAAGAGTCAGGAAATCAATCTGACTTGGAGGAATTTGAAGTAGAAAAATTACTTGCTGTGTGCTATGGTGATCCAAACGGCGTCAAAAAACCAGGACTATATTTTAAAGTGCGTTGGCTGGGTTATGATTCCAGTTATGACACATGGGAGCCAATAGATGGATTGAGTGATTGCAAGGAAGTTATGAAAGATTTTGTGACAAAAGGCTACAAGAAAAGATTATTGCCTCTTCCTGGTGATGCTAACTTTATTTGTGGTGGACCCCCGTGTCAAGGAGTAAGTGGTTTCAACCGCTTCAGGAACGCAGAAGCTCCATTAGAGGATACAAAGAATAAGCAGTTGCTTGTTTACATGGATATTATTGATTTTTTGAAGCCAAAATATGTCCTCATGGAGAATGTCGTTGATATTTTGAAGTTTTCTGGTGGTTATCTGGGGCGTTATGCCATAGGCCGTCTTGTAGCTATGAATTATCAAGCAAGAATGGGCATGATGGCAGCAGGGTCTTATGGCCTTCCACAATTTCGTATGCGTGTTTTCCTTTGGGGAGCTCGTCCTACTGAGCAATTGCCTCCATATCCGTTACCAACGCATGAGGTGGTGTCAAGAGGTTTTGTTCCCACTGAGTTTGAAGAAATTACAGTAGCTTATGATAAAAAGGATACCTGTCAGCTGGCTGGTGCTCTTTTACTTGATGATGCAATATCAGATCTCCCACCTGTTACAAATGATGAGAACCAGGATGAAAGGAACTATGGAGCTCCTGCTCGAACTGAGTTTCAAAGATATATTAGATTGAAGAAAAACGAGATGGTGGGTAGCATGGCTACTGCTCAAAGCACACCACGTAGAATACTGTATGATCATCGTCCTCTTCAATTGAACAAAGATGATTATGACAGAGTTTGCCAGATTCCCCAGAAGAAGGGTGCAAACTTCAGAGATCTACCTGGAGTACTTGTGAATGGCAACAAAGTTGAATGGGATCCATCGGTTGAAAGAGTGATGCTAGACTCTGGAAAGCCTTTGGTTCCTGATTATGCAATGACATTTGTCCGTGGGACCTCTACTAAGCCATTTGGTCGGTTGTGGTGGGATGAAATTGTGCCAACAGTGGTGACAAGGGCCGAGCCTCACAACCAGGCCATTCTCCACCCTAGACAAAACCGAGTACTTACCATTAGAGAGAATGCGAGACTACAAGGATTTCCTGATTGCTATAAACTTTGTGGGCCTGTCAAAGAGAGGTACATACAAGTTGGAAATGCTGTTGCTGTTCCTGTTGCTCTAGCATTGGGATACACGTTTGGTTTGGCCTGCCAGGGACTGTCTGACGATAAGCCTTTGACAACCCTCCCCTTCAAGTATCCAAGTTGTCTTGCCCTTTCATCTCTTGCAGGAACTGAGAATGATAACGAATCAAGTTGA

>Glyma.01g160300.2 sequence-type=CDS polypeptide=Glyma.01g160300.2.p locus=Glyma.01g160300 ID=Glyma.01g160300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAAAAACGCAGCGCATCAGACGCCACCGATGATGCACAAAACGACACCGTATCGCTGCTTCCCTCCCAACGCAAGAAGCCCAAGCACTCTGCTCCTAACCCCGACGCCTGCTTCGTCGGAAAGCCCATTCCTTCTGCCGAGGCCCGCGCCAAATGGCCCCACCGATACCCCTCCGAGGTGAAAAAGAAAGCTCCAGCTAGAAGCTCAGAAGAGGTTACGAGTGAAAACAGTGAGGTTATGCTGGCTAGGTGTCATTATCGTCAAGCTAAAGTAGATGGAGTTGTTTATAACCTCTATGATGATGCTTATGTTAAGGCCGAAGACGGTAAACCAGATTATATTGCACGAATCGTTGAGATGTTTGAGACTGTTGATAAGGAACAATGTTTTATGGCTCAGTGGTTCTACAGGGCCGAAGACACTGTGATAAAAAATCACGGTGATCTTGTTGACAAGAAGCGGGTTTTTATATCTGATGTGAAGGATGTAAATCCCCTTGACTGTATTGTTTCAAAAGTCAAAATTTTCAAAAAAAACCCAAGTGTAGATTTGGCTTCAAAGAAGGCAAAATTGCCTTTTTGTGATTACTATTATGACATGAAGTACACTGTGCCATATCTAACATTTTCCAACCTAGTCAATGAAACAGTTAAAACCGAGAGTGATGCATCTTCCACAATTTCTAGTGAATCTGGATCCATTGGTTGCGTTAATAATGCTAATCTGGCAAAGAGAAAGACTACTCAAAATAATAGTTCTGGTTCCTCGCAGTGGACTTTGCTAGACTTGTATTCTGGTTGTGGAGCCATGTCCACAGGGCTTTGTTTGGGTGCATCCTTGGCTGGAATAAAACTTGTCACAATGTGGGCTGTGGACATTAATGCACATGCATGCAAAAGTTTGAAGCTGAACCACCCTGAAACTCATGTTAGAAATGAACCAGCTGAAGACTTCTTAAACCTAATAAAAGCTTGGGCCAAGCTTTGTGAAGAGTTTGCATTATTAGGATCAGAACGGTCAGATTCCGATCCAGACATGGATGAAGATGAGAATGAAGCTGTGCAAAAAGAAGAGTCAGGAAATCAATCTGACTTGGAGGAATTTGAAGTAGAAAAATTACTTGCTGTGTGCTATGGTGATCCAAACGGCGTCAAAAAACCAGGACTATATTTTAAAGTGCGTTGGCTGGGTTATGATTCCAGTTATGACACATGGGAGCCAATAGATGGATTGAGTGATTGCAAGGAAGTTATGAAAGATTTTGTGACAAAAGGCTACAAGAAAAGATTATTGCCTCTTCCTGGTGATGCTAACTTTATTTGTGGTGGACCCCCGTGTCAAGGAGTAAGTGGTTTCAACCGCTTCAGGAACGCAGAAGCTCCATTAGAGGATACAAAGAATAAGCAGTTGCTTGTTTACATGGATATTATTGATTTTTTGAAGCCAAAATATGTCCTCATGGAGAATGTCGTTGATATTTTGAAGTTTTCTGGTGGTTATCTGGGGCGTTATGCCATAGGCCGTCTTGTAGCTATGAATTATCAAGCAAGAATGGGCATGATGGCAGCAGGGTCTTATGGCCTTCCACAATTTCGTATGCGTGTTTTCCTTTGGGGAGCTCGTCCTACTGAGCAATTGCCTCCATATCCGTTACCAACGCATGAGGTGGTGTCAAGAGGTTTTGTTCCCACTGAGTTTGAAGTAAGGACTAATAGATTAAGACAATATTTCTCCATTTTCCTCAAGAAGCATTGTCTTTGA

Predicted protein sequences of Glyma.01g160300

Limit To All Plant Sequences

>Glyma.01g160300.1.p sequence-type=predicted peptide transcript=Glyma.01g160300.1 locus=Glyma.01g160300 ID=Glyma.01g160300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKKRSASDATDDAQNDTVSLLPSQRKKPKHSAPNPDACFVGKPIPSAEARAKWPHRYPSEVKKKAPARSSEEVTSENSEVMLARCHYRQAKVDGVVYNLYDDAYVKAEDGKPDYIARIVEMFETVDKEQCFMAQWFYRAEDTVIKNHGDLVDKKRVFISDVKDVNPLDCIVSKVKIFKKNPSVDLASKKAKLPFCDYYYDMKYTVPYLTFSNLVNETVKTESDASSTISSESGSIGCVNNANLAKRKTTQNNSSGSSQWTLLDLYSGCGAMSTGLCLGASLAGIKLVTMWAVDINAHACKSLKLNHPETHVRNEPAEDFLNLIKAWAKLCEEFALLGSERSDSDPDMDEDENEAVQKEESGNQSDLEEFEVEKLLAVCYGDPNGVKKPGLYFKVRWLGYDSSYDTWEPIDGLSDCKEVMKDFVTKGYKKRLLPLPGDANFICGGPPCQGVSGFNRFRNAEAPLEDTKNKQLLVYMDIIDFLKPKYVLMENVVDILKFSGGYLGRYAIGRLVAMNYQARMGMMAAGSYGLPQFRMRVFLWGARPTEQLPPYPLPTHEVVSRGFVPTEFEEITVAYDKKDTCQLAGALLLDDAISDLPPVTNDENQDERNYGAPARTEFQRYIRLKKNEMVGSMATAQSTPRRILYDHRPLQLNKDDYDRVCQIPQKKGANFRDLPGVLVNGNKVEWDPSVERVMLDSGKPLVPDYAMTFVRGTSTKPFGRLWWDEIVPTVVTRAEPHNQAILHPRQNRVLTIRENARLQGFPDCYKLCGPVKERYIQVGNAVAVPVALALGYTFGLACQGLSDDKPLTTLPFKYPSCLALSSLAGTENDNESS*

>Glyma.01g160300.2.p sequence-type=predicted peptide transcript=Glyma.01g160300.2 locus=Glyma.01g160300 ID=Glyma.01g160300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKKRSASDATDDAQNDTVSLLPSQRKKPKHSAPNPDACFVGKPIPSAEARAKWPHRYPSEVKKKAPARSSEEVTSENSEVMLARCHYRQAKVDGVVYNLYDDAYVKAEDGKPDYIARIVEMFETVDKEQCFMAQWFYRAEDTVIKNHGDLVDKKRVFISDVKDVNPLDCIVSKVKIFKKNPSVDLASKKAKLPFCDYYYDMKYTVPYLTFSNLVNETVKTESDASSTISSESGSIGCVNNANLAKRKTTQNNSSGSSQWTLLDLYSGCGAMSTGLCLGASLAGIKLVTMWAVDINAHACKSLKLNHPETHVRNEPAEDFLNLIKAWAKLCEEFALLGSERSDSDPDMDEDENEAVQKEESGNQSDLEEFEVEKLLAVCYGDPNGVKKPGLYFKVRWLGYDSSYDTWEPIDGLSDCKEVMKDFVTKGYKKRLLPLPGDANFICGGPPCQGVSGFNRFRNAEAPLEDTKNKQLLVYMDIIDFLKPKYVLMENVVDILKFSGGYLGRYAIGRLVAMNYQARMGMMAAGSYGLPQFRMRVFLWGARPTEQLPPYPLPTHEVVSRGFVPTEFEVRTNRLRQYFSIFLKKHCL*

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