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Report for Sequence Feature Glyma.01g148600

Feature Type:gene_model
Chromosome:Gm01
Start:48570619
stop:48574571
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g148600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37740.1AT growth-regulating factor 2 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0032502GO-bp developmental process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016818GO-mf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides JGI N/AIEA
PF08879PFAM WRC JGI N/AIEA
PF08880PFAM QLQ JGI N/AIEA

Proteins Associated with Glyma.01g148600
LocusGene SymbolProtein Name
GRF1 growth-regulating factor

Expression Patterns of Glyma.01g148600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g148600 not represented in the dataset
Glyma.01g148600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g148600
ParalogEvidenceComments
Glyma.09g212500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g148600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g35145 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g148600
>Glyma.01g148600.1 sequence-type=CDS polypeptide=Glyma.01g148600.1.p locus=Glyma.01g148600 ID=Glyma.01g148600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCGTTCCTCCGCCGTATGCGGCGGCGATGTGGACGCCGTTCACGGCGGCACAGTGGCACGAGCTGGAGCACCAGGCCCTCATCTTCAAGTACCTCAAGGCGGGTCTCTCGGTTCCCCCTGACCTCCTTCTCCCCATTCGCAAGAGCCTCCAGTTGATGTCTCATCCATCTCTGGGGTTTTATGGGAAGAAGATAGACCCTGAACCGGGTCGGTGCAGGAGAACCGATGGGAAAAAGTGGAGGTGTTCGAGGGATGCGCACCCTGACTCCAAGTACTGCGACCGCCATATGATACGGCGGCGTTACCGTTCAAGAAAGCCTGTGGAATCATCTCAAACTCACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTACTGCTGCTTCTTCAAATTCAAATCCTGTTGCTGGTGGTGGTGGTGGTTCTGTTGCTAATGTTTCTGGAACTGCAACTGCTGCAAAAACCCTTCACACCCTTCCCTTGCACACCAATGGTGCAAGGGAAGGTTTCACTTTCACCCTTGGGAACAACACCAACACCACCCTCCCACACCTTCACATGAACCCCCTCACTCTTTCAGCTGACAATACCAAGAAAACTTACAGGTTTGGACTGAACTCAGAAGCAGATGAGCACAACGTCTTACAGAAAGATCTGGGAAGTGTGAGGTATCAAGGTTATGACTTTACCTCAGATGCCATGTGGTCTCAAATGTCTCACATTCCATCAAATACTGTTTCGGAATCAAGAAGTGGTTCTACTATGCTGGGCAACTGCTTCCAACATCAAACAATGCGAGATGCTGAGCTGTTGAACCTGGAAACGGCAAGGACCAAAGATCTTGTCTTTAGTGGCCAGTTAAGTTCAGCTGGGGGTTTGAAACAGGAATATCAGTCTCCCCAGTCTCTCTTCAGTGACTGGGACTGGAAGAAGGATTTAAGTTCCTCTGCCCTTGAGTATAAGCCTAACAAGGATTTTAACTGCAACCCAGATGCCAATGTTTGA
Predicted protein sequences of Glyma.01g148600
>Glyma.01g148600.1.p sequence-type=predicted peptide transcript=Glyma.01g148600.1 locus=Glyma.01g148600 ID=Glyma.01g148600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVPPPYAAAMWTPFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRKSLQLMSHPSLGFYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESSQTHSSSSSSSSSSATAASSNSNPVAGGGGGSVANVSGTATAAKTLHTLPLHTNGAREGFTFTLGNNTNTTLPHLHMNPLTLSADNTKKTYRFGLNSEADEHNVLQKDLGSVRYQGYDFTSDAMWSQMSHIPSNTVSESRSGSTMLGNCFQHQTMRDAELLNLETARTKDLVFSGQLSSAGGLKQEYQSPQSLFSDWDWKKDLSSSALEYKPNKDFNCNPDANV*






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