Glyma.01g144800

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Report for Sequence Feature Glyma.01g144800

Feature Type:	gene_model
Chromosome:	Gm01
Start:	47935477
stop:	47944771
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g144800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01940.1	AT	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	JGI	N/A	IEA
GO:0000413	GO-bp	protein peptidyl-prolyl isomerization	EnsemblGenomes	N/A	IEA
GO:0006457	GO-bp	protein folding	EnsemblGenomes	N/A	IEA
GO:0006457	GO-bp	protein folding	JGI	N/A	IEA
GO:0003755	GO-mf	peptidyl-prolyl cis-trans isomerase activity	EnsemblGenomes	N/A	IEA
GO:0003755	GO-mf	peptidyl-prolyl cis-trans isomerase activity	JGI	N/A	IEA
GO:0016853	GO-mf	isomerase activity	EnsemblGenomes	N/A	IEA
KOG0884	KOG	Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase	JGI	N/A	IEA
PTHR11071	Panther	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	JGI	N/A	IEA
PTHR11071:SF38	Panther		JGI	N/A	IEA
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI	N/A	IEA

Proteins Associated with Glyma.01g144800

Locus	Gene Symbol	Protein Name
	CYP42	peptidyl-prolyl cis-trans isomerase CYP42

Expression Patterns of Glyma.01g144800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g144800 not represented in the dataset	Glyma.01g144800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.01g144800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g34630	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g144800

Limit To All Plant Sequences

>Glyma.01g144800.2 sequence-type=transcript locus=Glyma.01g144800 ID=Glyma.01g144800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACTCGGTTATAAATTATAATCTCCAAACGAAGATATAGCTTTCGGTGGGAGACAGTGTTTTCATTCGTCTATATTTATTGGTTAGCCCTGCAAAAGTGCATATTCAAAAGCCGAACCCAAATAACACAACACAAAACGATCTTTTATTTCTCTGTCTAGAGAAGAATCTAGCAAGCCTTGCTCGTCACAAAATCAAAGGTTGCAACTGAGAACTCACTCCTTCGAATCAAAATCAAAAAATGTCGGTGACTCTGCACACAAACCTAGGCGACATCAAGTGTGAAATCTTCTGCGACGAGGTCCCTAAAACCTCCGAGAATTTTTTAGCGCTATGTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGATCCAACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAACGATGAGATAAGAGAATCTCTGAAGCACAATGCAAGAGGAATATTAGCAATGGCCAATAGTGGTCCAAATACTAATGGAAGCCAATTTTTCTTGACTTATGCAAAGCAGCCTCATTTAAATGGGCTATACACCGTGTTTGGCAAAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAGAAGACACAAACAGGGGCAGGGGACCGACCGCTTGCAGAGATAAGGCTCAATCGTGTAACAATACATGCTAATCCACTTGCTGGTTAGCCTTTTGTCTCAACAGTTTTTTATGTAAAATTTAAGTTTTTGTTTTCCAAGTGATCTAGCTTAAAGGGGAGGAGAAAGTGAGTTCTTATGTACTAATTTGAGTACTTGTTCGTACCTACTGATTCAAAGAAGCATTTTGATTGATCAAGTAGTAAAGTGTATATTGATTTGTGAGATATGCATGGAATACGATAAACACATCTTTATGGATTAGTTCAAGTGGCTAAATTTTATGGTGTGAGAGATCTTGGTGTTGGCATTGTGAAATTTTTTAATGCCAAGCGTATACCTTTAATTGGTGTCATATGTTGCCATTTACTATA

Coding sequences of Glyma.01g144800

Limit To All Plant Sequences

>Glyma.01g144800.1 sequence-type=CDS polypeptide=Glyma.01g144800.1.p locus=Glyma.01g144800 ID=Glyma.01g144800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGGTGACTCTGCACACAAACCTAGGCGACATCAAGTGTGAAATCTTCTGCGACGAGGTCCCTAAAACCTCCGAGAATTTTTTAGCGCTATGTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGATCCAACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAACGATGAGATAAGAGAATCTCTGAAGCACAATGCAAGAGGAATATTAGCAATGGCCAATAGTGGTCCAAATACTAATGGAAGCCAATTTTTCTTGACTTATGCAAAGCAGCCTCATTTAAATGGGCTATACACCGTGTTTGGCAAAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAGAAGTACTTTGTTGTGCAGACACAAACAGGGGCAGGGGACCGACCGCTTGCAGAGATAAGGCTCAATCGTGTAACAATACATGCTAATCCACTTGCTGGTTAG

>Glyma.01g144800.2 sequence-type=CDS polypeptide=Glyma.01g144800.2.p locus=Glyma.01g144800 ID=Glyma.01g144800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGGTGACTCTGCACACAAACCTAGGCGACATCAAGTGTGAAATCTTCTGCGACGAGGTCCCTAAAACCTCCGAGAATTTTTTAGCGCTATGTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGATCCAACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAACGATGAGATAAGAGAATCTCTGAAGCACAATGCAAGAGGAATATTAGCAATGGCCAATAGTGGTCCAAATACTAATGGAAGCCAATTTTTCTTGACTTATGCAAAGCAGCCTCATTTAAATGGGCTATACACCGTGTTTGGCAAAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAGAAGACACAAACAGGGGCAGGGGACCGACCGCTTGCAGAGATAAGGCTCAATCGTGTAACAATACATGCTAATCCACTTGCTGGTTAG

Predicted protein sequences of Glyma.01g144800

Limit To All Plant Sequences

>Glyma.01g144800.1.p sequence-type=predicted peptide transcript=Glyma.01g144800.1 locus=Glyma.01g144800 ID=Glyma.01g144800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFLTYAKQPHLNGLYTVFGKVIHGFEVLDLMEKYFVVQTQTGAGDRPLAEIRLNRVTIHANPLAG*

>Glyma.01g144800.2.p sequence-type=predicted peptide transcript=Glyma.01g144800.2 locus=Glyma.01g144800 ID=Glyma.01g144800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFLTYAKQPHLNGLYTVFGKVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG*

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