SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.01g143500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.01g143500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.01g143500

Feature Type:gene_model
Chromosome:Gm01
Start:47711923
stop:47714509
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g143500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62020.1AT heat shock transcription factor B2A JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR10015Panther HEAT SHOCK TRANSCRIPTION FACTOR JGI N/AIEA
PTHR10015:SF7Panther JGI N/AIEA
PF00447PFAM HSF-type DNA-binding JGI N/AIEA

Proteins Associated with Glyma.01g143500
LocusGene SymbolProtein Name
HSF-05 heat stress transcription factor 5

Expression Patterns of Glyma.01g143500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g143500 not represented in the dataset
Glyma.01g143500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01g143500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g34490 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g143500
>Glyma.01g143500.1 sequence-type=CDS polypeptide=Glyma.01g143500.1.p locus=Glyma.01g143500 ID=Glyma.01g143500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAATAATTATAGTGTGTTAGAGCTCAACCTTGGTTTAGGCAACAACAACGTTGGTGGTCATGCAGGGCAATCACCAAGGCAAAGGTGCCCCGCACCGTTTCTGTTGAAAACGTACGATTTGTTGGAAGAATTAGGTGAGAACATTGAAGATAGCACCAAAATTGTGTCGTGGAATGCAGAAGGAACTGGCTTTGTTGTGTGGTCTCCATCTGAGTTCTCTGAGCTCACCTTGCCCAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAATACCTATGGATTTAAGAAAATATCATCAAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCACATGTTAGGTGAAATCACAAGGAAAAAGTGCGAGCCAAGTGTGTTTCCTGCATACCTCAAGTCTTCTTCTGAGGAAAATAATGCAACGAGTTCCACGGAAGAAAACAATGATCATCAACTACTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGAGCTGCAAGTGCAAATAGATGAATGCAAAGCACTTGAAATGAAGTTGTTGGAATGTCTCTCTCAGTTTATGGACACCCACCAAAATAAAGTTAGGAGACTATGTTAA
Predicted protein sequences of Glyma.01g143500
>Glyma.01g143500.1.p sequence-type=predicted peptide transcript=Glyma.01g143500.1 locus=Glyma.01g143500 ID=Glyma.01g143500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANNYSVLELNLGLGNNNVGGHAGQSPRQRCPAPFLLKTYDLLEELGENIEDSTKIVSWNAEGTGFVVWSPSEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENNATSSTEENNDHQLLMEENKNLKKERLELQVQIDECKALEMKLLECLSQFMDTHQNKVRRLC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo