SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45270.1 | AT | glycoprotease 1 | JGI | N/A | IEA |
| GO:0002949 | GO-bp | tRNA threonylcarbamoyladenosine modification | EnsemblGenomes | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0009793 | GO-bp | embryo development ending in seed dormancy | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0004222 | GO-mf | metalloendopeptidase activity | EnsemblGenomes | N/A | IEA |
| PTHR11735 | Panther | O-SIALOGLYCOPROTEIN ENDOPEPTIDASE | JGI | N/A | IEA |
| PTHR11735:SF6 | Panther | TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN OSGEP-RELATED | JGI | N/A | IEA |
| PF00814 | PFAM | Glycoprotease family | JGI | N/A | IEA |
| GN7V-54901 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.01g140000 not represented in the dataset |
Glyma.01g140000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g027900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.01g140000.1 sequence-type=CDS polypeptide=Glyma.01g140000.1.p locus=Glyma.01g140000 ID=Glyma.01g140000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGCTCATGCTCTGGTTGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATGTACTCGTTCTTGCTCGTGATCTTGGGCAGTACATACAACTTGGAACTACAATAGATAATGCTATCGGTGAGGCATATGACAAGACAGCAAAATGGCTTGGACTTGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTCTTGTGATTGTTGCCTTAGACTGCAACTTTTCCTATGCTGGTCTAAAAACCCAAGTACGGCTGGAAATTGAGTCCAAAATGATTGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGAAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCATGTGTTGTATAACTACTATCTATTTCATTTTCTACATGTCAAGCAGCGAATTGCTGTGTTACATCTTGAGGAAAGGTGTGAACGAGCAATACTGTGGGCATTTAAGATGGAGCCTTCCATAAGACACTTGGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGGGCCCGGCTTCATTATGGGCAAGGATTCTGGATTCAAAGAGGGTTAACGTGGAAGGTGGGGAATGGAGCCAAAATCAAGTTTTGGGAGGATGTTTGGAGCTATGGAGACACACCGCTTCTGGCAAAATACCCCAGATTGTACCTAATTTCAGACCAACAGAACAAGAATATTCAGGAGATGGGTCAGCAGACGGACAATGGATCCACAAAAAAAGATGAATGGATTTGGAAACCAGAACCTAGTGGACAATATTCGGTAAGAACTGCCTATAACATGTTGAAAGGAGTGGATGTTGAGGAGGATAACATGTGGGTGTTTGAGGAGCTATGGAAGATACGAGTTCCACCTAAATTACTATTTTTGCATGGAGGTTATTAA
>Glyma.01g140000.1.p sequence-type=predicted peptide transcript=Glyma.01g140000.1 locus=Glyma.01g140000 ID=Glyma.01g140000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEAHALVARLIEKDLQFPFMALLISGGHNVLVLARDLGQYIQLGTTIDNAIGEAYDKTAKWLGLDLRRSGGPAIEKLAMEGNAESVKFSLVIVALDCNFSYAGLKTQVRLEIESKMIDAKIPISSASNEDRLSRADIAASFQHVLYNYYLFHFLHVKQRIAVLHLEERCERAILWAFKMEPSIRHLVVSGGVASNQYVRARLHYGQGFWIQRGLTWKVGNGAKIKFWEDVWSYGDTPLLAKYPRLYLISDQQNKNIQEMGQQTDNGSTKKDEWIWKPEPSGQYSVRTAYNMLKGVDVEEDNMWVFEELWKIRVPPKLLFLHGGY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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