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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45300.1 | AT | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | JGI | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009073 | GO-bp | aromatic amino acid family biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009423 | GO-bp | chorismate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003866 | GO-mf | 3-phosphoshikimate 1-carboxyvinyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016765 | GO-mf | transferase activity, transferring alkyl or aryl (other than methyl) groups | EnsemblGenomes | N/A | IEA |
| GO:0016765 | GO-mf | transferase activity, transferring alkyl or aryl (other than methyl) groups | JGI | N/A | IEA |
| KOG0692 | KOG | Pentafunctional AROM protein | JGI | N/A | IEA |
| PTHR21090 | Panther | AROM/DEHYDROQUINATE SYNTHASE | JGI | N/A | IEA |
| PTHR21090:SF3 | Panther | JGI | N/A | IEA | |
| PF00275 | PFAM | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | JGI | N/A | IEA |
| ARO-PWY | SoyCyc9 | chorismate biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-6163 | SoyCyc9 | chorismate biosynthesis from 3-dehydroquinate | Plant Metabolic Network | ISS | |
| GN7V-63136 | SoyCyc9-rxn | 3-phosphoshikimate 1-carboxyvinyltransferase | Plant Metabolic Network | ISS |
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Glyma.01g139600 not represented in the dataset |
Glyma.01g139600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g027400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g33660 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g139600.1 sequence-type=CDS polypeptide=Glyma.01g139600.1.p locus=Glyma.01g139600 ID=Glyma.01g139600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCCAAGTGAGCAGAGTGCACAATCTTGCTCAAAGCACTCAAATTTTTGGCCATTCTTCCAACTCCAACAAACTCAAATCGGTGAATTCGGTTTCATTGAGGCCACGCCTTTGGGGGGCCTCAAAATCTCGCATCCCGATGCATAAAAATGGAAGCTTTATGGGAAATTTTAATGTGGGGAAGGGAAATTCCGGCGTGTTTAAGGTTTCTGCATCGGTCGCCGCCGCAGAGAAGCCGTCAACGTCGCCGGAGATCGTGTTGGAACCCATCAAAGACTTCTCGGGTACCATCACATTGCCAGGGTCCAAGTCTCTGTCCAATCGAATTTTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTTGTAGACAACTTGTTGTATAGTGAGGATATTCATTACATGCTTGGTGCATTAAGGACCCTTGGACTGCGTGTGGAAGATGACAAAACAACCAAACAAGCAATTGTTGAAGGCTGTGGGGGATTGTTTCCCACTAGTAAGGAATCTAAAGATGAAATCAATTTATTCCTTGGAAATGCTGGTACTGCAATGCGTCCTTTGACAGCAGCTGTGGTTGCTGCAGGTGGAAATGCAAGCTACGTACTTGATGGGGTGCCCCGAATGAGAGAGAGGCCAATTGGGGATTTGGTTGCTGGTCTTAAGCAACTTGGTGCAGATGTTGATTGCTTTCTTGGCACAAACTGTCCACCTGTTCGTGTAAATGGGAAGGGAGGACTTCCTGGCGGAAAGGTGAAACTGTCTGGATCAGTTAGCAGTCAATACTTGACTGCTTTGCTTATGGCAGCTCCTTTAGCTCTTGGTGATGTGGAAATTGAGATTGTTGATAAACTGATTTCTGTTCCATATGTTGAAATGACTCTGAAGTTGATGGAGCGTTTTGGAGTTTCTGTGGAACACAGTGGTAATTGGGATAGGTTCTTGGTCCATGGAGGTCAAAAGTACAAGTCTCCTGGCAATGCTTTTGTTGAAGGTGATGCTTCAAGTGCCAGTTATTTACTAGCTGGTGCAGCAATTACTGGTGGGACTATCACTGTTAATGGCTGTGGCACAAGCAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTTGAAAAGATGGGAGCTAAGGTTACATGGTCAGAGAACAGTGTCACTGTTTCTGGACCACCACGAGATTTTTCTGGTCGAAAAGTCTTGCGAGGCATTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACACTTGCTGTTGTTGCACTATTTGCTAATGGTCCCACTGCTATAAGAGATGTGGCAAGTTGGAGAGTTAAAGAGACTGAGAGGATGATAGCAATCTGCACAGAACTCAGAAAGCTAGGAGCAACAGTTGAAGAAGGTCCTGATTACTGTGTGATTACTCCACCTGAGAAATTGAATGTCACAGCTATAGACACATATGATGACCACAGAATGGCCATGGCATTCTCTCTTGCTGCTTGTGGGGATGTTCCAGTAACCATCAAGGATCCTGGTTGCACCAGGAAGACATTTCCTGACTACTTTGAAGTCCTTGAGAGGTTAACAAAGCACTAA
>Glyma.01g139600.1.p sequence-type=predicted peptide transcript=Glyma.01g139600.1 locus=Glyma.01g139600 ID=Glyma.01g139600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAQVSRVHNLAQSTQIFGHSSNSNKLKSVNSVSLRPRLWGASKSRIPMHKNGSFMGNFNVGKGNSGVFKVSASVAAAEKPSTSPEIVLEPIKDFSGTITLPGSKSLSNRILLLAALSEGTTVVDNLLYSEDIHYMLGALRTLGLRVEDDKTTKQAIVEGCGGLFPTSKESKDEINLFLGNAGTAMRPLTAAVVAAGGNASYVLDGVPRMRERPIGDLVAGLKQLGADVDCFLGTNCPPVRVNGKGGLPGGKVKLSGSVSSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSGNWDRFLVHGGQKYKSPGNAFVEGDASSASYLLAGAAITGGTITVNGCGTSSLQGDVKFAEVLEKMGAKVTWSENSVTVSGPPRDFSGRKVLRGIDVNMNKMPDVAMTLAVVALFANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTAIDTYDDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFEVLERLTKH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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