Report for Sequence Feature Glyma.01g136000
Feature Type: gene_model
Chromosome: Gm01
Start: 45850969
stop: 45855393
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.01g136000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G45140.1 AT
plant VAP homolog 12
JGI N/A IEA
GO:0005789 GO-cc
endoplasmic reticulum membrane
EnsemblGenomes N/A IEA
GO:0016020 GO-cc
membrane
EnsemblGenomes N/A IEA
GO:0016021 GO-cc
integral component of membrane
EnsemblGenomes N/A IEA
GO:0005198 GO-mf
structural molecule activity
JGI N/A IEA
KOG0439
KOG
VAMP-associated protein involved in inositol metabolism
JGI N/A IEA
PTHR10809 Panther
VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN
JGI N/A IEA
PTHR10809:SF6 Panther
AT11025P-RELATED
JGI N/A IEA
PF00635 PFAM
MSP (Major sperm protein) domain
JGI N/A IEA
Expression Patterns of Glyma.01g136000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.01g136000
Paralog Evidence Comments
Glyma.03g032100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.01g136000 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma01g33220 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.01g136000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.01g136000.1 sequence-type=CDS polypeptide=Glyma.01g136000.1.p locus=Glyma.01g136000 ID=Glyma.01g136000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTCCGGCGAGCTCCTCCACATACAACCCCAGGAGCTGCAGTTTCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTTTGCAGTTGTCTAACAAGACTGACAACTATGTGGCTTTCAAGGTTAAGACAACAAATCCTAAGAAATATTGTGTTAGACCTAACACTGGAGTTGTGATGCCTAGGTCTACTTGTGATGTCATAGTAACAATGCAAGCCCAAAAGGAGGCACCTCCTGACATGCAATGCAAGGATAAGTTTCTCCTTCAAAGTGTAGTTGCAAGCCCTGGGGCAACCACAAAAGATATCACTCCAGAAATGTTCAATAAAGAATCTGGTCATGATGTTGAAGAGTGCAAGTTGAGAGTTGTTTATGTTGCTCCTCCTCAACCACCATCCCCAGTTCGAGAAGGATCTGATGAAGACTCATCACCTCGTGCATCTGTATCTGAGAATGGACATTCAAGTGCTGCGGAATTTACAGGGGCTTCAAAAGCTTTCAATGAGCGGGCTGAACATCAGGATGCTTCTTTTGAGGCAAGAGCTCATATTTCTAAGGTAACTGAGGAGAGGAATTCTGTTGTTGAGCAAAACAGAAGACTTCAGCAAGAACTGGAGCTTTTGAGGCGTGATGCCAGCAGAAGCCACGGCGGTGTACCATTCATGTACGTAGTTCTTGTTGGCATCATTGGACTCATCTTGGGTTTCCTATTGAAGAGGACGTGA
Predicted protein sequences of Glyma.01g136000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.01g136000.1.p sequence-type=predicted peptide transcript=Glyma.01g136000.1 locus=Glyma.01g136000 ID=Glyma.01g136000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSGELLHIQPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVMPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVVASPGATTKDITPEMFNKESGHDVEECKLRVVYVAPPQPPSPVREGSDEDSSPRASVSENGHSSAAEFTGASKAFNERAEHQDASFEARAHISKVTEERNSVVEQNRRLQQELELLRRDASRSHGGVPFMYVVLVGIIGLILGFLLKRT*