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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58590.1 | AT | RAN binding protein 1 | JGI | N/A | IEA |
| GO:0000082 | GO-bp | G1/S transition of mitotic cell cycle | EnsemblGenomes | N/A | IEA |
| GO:0006405 | GO-bp | RNA export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0006511 | GO-bp | ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006606 | GO-bp | protein import into nucleus | EnsemblGenomes | N/A | IEA |
| GO:0007051 | GO-bp | spindle organization | EnsemblGenomes | N/A | IEA |
| GO:0043547 | GO-bp | positive regulation of GTPase activity | EnsemblGenomes | N/A | IEA |
| GO:0046907 | GO-bp | intracellular transport | EnsemblGenomes | N/A | IEA |
| GO:0046907 | GO-bp | intracellular transport | JGI | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005096 | GO-mf | GTPase activator activity | EnsemblGenomes | N/A | IEA |
| GO:0008536 | GO-mf | Ran GTPase binding | EnsemblGenomes | N/A | IEA |
| KOG0864 | KOG | Ran-binding protein RANBP1 and related RanBD domain proteins | JGI | N/A | IEA |
| PTHR23138 | Panther | RAN BINDING PROTEIN | JGI | N/A | IEA |
| PTHR23138:SF10 | Panther | JGI | N/A | IEA | |
| PF00638 | PFAM | RanBP1 domain | JGI | N/A | IEA |
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Glyma.01g119300 not represented in the dataset |
Glyma.01g119300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g055400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g29410 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g119300.1 sequence-type=CDS polypeptide=Glyma.01g119300.1.p locus=Glyma.01g119300 ID=Glyma.01g119300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGACCACCGAGCCGGAGCACCGCCGCGACGAAAACGACGACGACAGCGTGACGGCGGAGGATGAGGACACCGGAGCGCAGGTCGCTCCGATCGTGAAGCTCGAAGAGGTCGCCGTCACCACCGGCGAGGAGGACGAGGATCCCATCCTTGATCTGAAGGCGAAGCTGTATCGGTTTGACAAGGAGGGGAACCAGTGGAAGGAGCGTGGCGGCGGGAACGTTAAGCTGCTGAAACATAAGGTCACCGGGAAGGTGAGACTAGTGATGCGCCAATCCAAGACGCTCAAGATCTGCGCAAATCATCTCGTTCATCACAGTTTGACGGTACAGGAGCATTCTGGGAATGAGAAATCGTGTGTGTGGCATGCTTCTGATTTTGCAGATGGGGAATTGAAGGATGAGCTGTTCTGTATTAGGTTTCCCTCTGTTGAGAACTGTAAGGCCTTCATGACAACTATGCAAGAAGTGGCAGAATCACAAGGAGAAGGGGAGGAAAACAAAGATGCTTCGGCTACTGCCGATCTCCTCGAGAAACTAACTGTTGGTGAAGACAAATCAGACGAGAAAGAGCCGGAAAAGGTCCAGATCACCAAGAAACTAACTGTTGGCGAGGATAAATCGGAGGATGAAGAGCCGGAAATGGCCACAAACACCAATGAGAAAGGTGAGCAGGATGTAGAAGCCTGA
>Glyma.01g119300.1.p sequence-type=predicted peptide transcript=Glyma.01g119300.1 locus=Glyma.01g119300 ID=Glyma.01g119300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATTEPEHRRDENDDDSVTAEDEDTGAQVAPIVKLEEVAVTTGEEDEDPILDLKAKLYRFDKEGNQWKERGGGNVKLLKHKVTGKVRLVMRQSKTLKICANHLVHHSLTVQEHSGNEKSCVWHASDFADGELKDELFCIRFPSVENCKAFMTTMQEVAESQGEGEENKDASATADLLEKLTVGEDKSDEKEPEKVQITKKLTVGEDKSEDEEPEMATNTNEKGEQDVEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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