SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G01310.1 | AT | APRATAXIN-like | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | JGI | N/A | IEA |
| KOG2134 | KOG | Polynucleotide kinase 3' phosphatase | JGI | N/A | IEA |
| PTHR12486 | Panther | APRATAXIN-RELATED | JGI | N/A | IEA |
| PTHR12486:SF4 | Panther | APRATAXIN | JGI | N/A | IEA |
| PF01661 | PFAM | Macro domain | JGI | N/A | IEA |
| PF06414 | PFAM | Zeta toxin | JGI | N/A | IEA |
| PF11969 | PFAM | Scavenger mRNA decapping enzyme C-term binding | JGI | N/A | IEA |
| GN7V-65003 | SoyCyc9-rxn | adenylylsulfatase | Plant Metabolic Network | ISS |
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Glyma.01g117800 not represented in the dataset |
Glyma.01g117800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g29150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g117800.1 sequence-type=CDS polypeptide=Glyma.01g117800.1.p locus=Glyma.01g117800 ID=Glyma.01g117800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACATGGACGTGGAAGAAGCTTCTGCACCTAAAGAGAGAAAGCCCGTTTTGGTGATCTTGGTGGGCGCTCCAGGGAGCGGGAAGTCCACCTTCTGCGAAGAAGTTATGGGTTCCTCTACTCGCCCTTGGGTTCGCGTTTGCCAGGACACTATTGGAAATGGTAAAGCAGGAAATAAAGCTCAGTGCCTAAGCAGTGCAACTAGAGCATTGAAGGATGGGAAGAGTGTATTTATTGATAGGTGCAATCTTGACAGAGAACAGCGTTCAGAATTTATAAAGCTTGGTGATGGACCCCAAATAGATGTCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTTTGTATTTCTCGATCAGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGCTTTAGCCGGATAACATTTTGTCAGAATGAAAGTGATGTAAAAAATGCTCTTAACACATACAGCACACTTGGGCCACTGGATAGTCTTCAATATGGCTGCTTTGGCCAGAAGAATCCTGATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTTAAAAGAGCAGAGGTCCCAGTTGCTGCTGCATCTAGAGAGAGTGGCATTGAAGACCCTACTTCCCAGACTCCGGGTAAAAATAACTCCTGCTGCAAAGATAAGCAAACATTTTCCTCAATTCCTGATAATGACAACTCAGAGACGAAGGAAGTAGAAAACCAAGCAGTTGGCTCTGTTGGTTCCCATGCCAATCAAGTTTCTCTGGATGATATTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTTCAATTCAACCATGAGAAGGCAGCTGATATTATTGTTGAGAAGGTTGCAGAGTTCTCAAATAAGTTTAGGAATGCCAGACTTGTTCTTGTTGACTTGTCTCATAAATCAAAGATTCTGTCCTTAGTTAAGGCTAAAATTGCAGGAAAAAACATTGATGCCCAAAAGTTCTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAGGGGAGGTTTGCGATGTAATGTCATTGCTAACGCTGCCAACTGGAGGTTAAATCCTGGAGGTGGAGGTGTAAATGCAGCAATTTTTAATGCTGCAGGTCCTGAACTGGAGTCTGCAACAAAAGAAAAAGTACAATCTCTTTCTCCAGGGAATGCTGCTGTTGTTCCTCTACCTTCATCTTCTCCTTTGTTCACCAGAGAGGGTGTAACCCATGTAATACATGTTGTTGGACCTAATATGAACCCACAAAGACCAAATTGTCTAAATAATGATTATAATAAAGGCTGCAAAATTCTCCAAGATGCTTATACTTCACTTTTTGAAGGCTTTGCATCTATTGTGAGGAACCAGACATGGCATCCAGTAGGAAAAAGTGAAAACCTTGAAAGGAAGTCTTTAGAGTTGCAGGTTCAGTCTGATTGTTCCAGAAATTATTTCACAAAAACTGATCAAAAGAGTAAGAGAGATGTTGATCATGGATTGGGAAAAAGTAAGAAATACAAGGGGACTCGGGATGACTCTGGATTGACCTTTACTGATTCTAGGAATGAAAATGTTGATTCAGAGCATAGAACTGAGAGGAGCATGACTAAGACATGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCAGAAAAGCTTAAGGATGACTTGCTTGAAATTTCCGATGATGTTGTTGTATTGAATGATATGTATCCCAAGGCACGGAAGCATGTTCTGGTGTTGGCACGAACCGGAGGTCTTGATTGCCTTGCAGATGTCCAAAAGGAGCACCTTCAGTTATTGAACAAGATGCATGATGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGAACGAGAATGCTTCCCTGGTATTTCGTCTCGGATATCACTCGGCACCATCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTCGAATCAATACATTTAAAGAACAAGAAGCACTGGAACTCATTTAACACAGCTTTCTTTCGTGACTCGGTAGATGTAATAGACGAGATCTCTAGTGATGGGAAGGCAAAATTGAAAGATGATGACAAACTACTGTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCACATCCAAACATACCGCGTTTAAAATCACATATTAGCAACTGCCAATCCCCCTTTCCTGCTCACCTGCTTCAACACGGACGTTTGGTGCGTGCACCAGGAGAACCTCATAGCAATGTCCAGTAG
>Glyma.01g117800.1.p sequence-type=predicted peptide transcript=Glyma.01g117800.1 locus=Glyma.01g117800 ID=Glyma.01g117800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDMDVEEASAPKERKPVLVILVGAPGSGKSTFCEEVMGSSTRPWVRVCQDTIGNGKAGNKAQCLSSATRALKDGKSVFIDRCNLDREQRSEFIKLGDGPQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQHKELPKLSEGFSRITFCQNESDVKNALNTYSTLGPLDSLQYGCFGQKNPDSKIQVGIMKFLKRAEVPVAAASRESGIEDPTSQTPGKNNSCCKDKQTFSSIPDNDNSETKEVENQAVGSVGSHANQVSLDDIPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSNKFRNARLVLVDLSHKSKILSLVKAKIAGKNIDAQKFFTHVGDITHLYSRGGLRCNVIANAANWRLNPGGGGVNAAIFNAAGPELESATKEKVQSLSPGNAAVVPLPSSSPLFTREGVTHVIHVVGPNMNPQRPNCLNNDYNKGCKILQDAYTSLFEGFASIVRNQTWHPVGKSENLERKSLELQVQSDCSRNYFTKTDQKSKRDVDHGLGKSKKYKGTRDDSGLTFTDSRNENVDSEHRTERSMTKTWGSWAQALHQIAMHPEKLKDDLLEISDDVVVLNDMYPKARKHVLVLARTGGLDCLADVQKEHLQLLNKMHDVGLKWAEKFLNENASLVFRLGYHSAPSMRQLHLHVISQDFESIHLKNKKHWNSFNTAFFRDSVDVIDEISSDGKAKLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISNCQSPFPAHLLQHGRLVRAPGEPHSNVQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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