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Report for Sequence Feature Glyma.01g105500

Feature Type:gene_model
Chromosome:Gm01
Start:35645067
stop:35653303
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g105500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16470.1AT proteasome subunit PAB1 JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process JGI N/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process EnsemblGenomesN/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process JGI N/AIEA
GO:0000502GO-cc proteasome complex EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005839GO-cc proteasome core complex EnsemblGenomesN/AIEA
GO:0005839GO-cc proteasome core complex JGI N/AIEA
GO:0019773GO-cc proteasome core complex, alpha-subunit complex EnsemblGenomesN/AIEA
GO:0019773GO-cc proteasome core complex, alpha-subunit complex JGI N/AIEA
GO:0004175GO-mf endopeptidase activity EnsemblGenomesN/AIEA
GO:0004175GO-mf endopeptidase activity JGI N/AIEA
GO:0004298GO-mf threonine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004298GO-mf threonine-type endopeptidase activity JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG0181 KOG 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 JGI N/AIEA
PTHR11599Panther PROTEASOME SUBUNIT ALPHA/BETA JGI N/AIEA
PTHR11599:SF16Panther PROTEASOME SUBUNIT ALPHA TYPE-2 JGI N/AIEA
PF00227PFAM Proteasome subunit JGI N/AIEA
PF10584PFAM Proteasome subunit A N-terminal signature JGI N/AIEA

Expression Patterns of Glyma.01g105500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g105500 not represented in the dataset
Glyma.01g105500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g105500
ParalogEvidenceComments
Glyma.03g073300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g105500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g25940 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g105500
>Glyma.01g105500.2 sequence-type=transcript locus=Glyma.01g105500 ID=Glyma.01g105500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACGGCGTCATTTTCAGCCTAACGCCCTTGTTTGTGGCCTCCCGAACACGAAAGTCGAAACCCGAACTCACTTCCTCACCCCATCATCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCATTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTCTGGACAGACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCCACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCCATTCCTGTCACTCAACTTGTTAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTTGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCGGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAAATTCAGGGTATTGACACCGGCCGAAATTGATGACTATTTGGCTGAAGTAGAATAATGTGCTATGAAGAAGTCGTCTATTCCTGAAGTTGTTTCACAGTTGGGTTTAATTGGTAGAGTGATGGCAATAGTAAATTTGTGAGCTACTCGTTGTGATGACCAGCAAGCCTTCAGATAAACCTTTTCCAAAGTCATCAACATTTTCAAACAAACCTAGTTTGTTTAGACGATGCGGCAATAACTTAATCAATATTTGCTAATTTATTATATCCCCCCTCCAAGGAATCTGATTGTTCCTATGTTATTTTATATATTGCCGGTTTAGTTCAATGCAATATAATTGCACTGCGATCTTAAATTCCTTTCCTGGTTCACCTTTCCTTGCCAATGATCATGTTCATTCACTTATGCAGTAGTAGGCTTTTTTTTCTCCTTGGCATTTTGTTATGTGAACAAGGTCCACACTAGTCTTTCAACGTAAGTAAGAGTATCTTATGTTATATGTTTGCGAA

>Glyma.01g105500.3 sequence-type=transcript locus=Glyma.01g105500 ID=Glyma.01g105500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCTTTCGTTTCAATTTCTGCGGTGTTGGGTATAAGGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTCTGGACAGACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCCACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCCATTCCTGTCACTCAACTTGTTAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTTGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCGGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAAATTCAGGGTATTGACACCGGCCGAAATTGATGACTATTTGGCTGAAGTAGAATAATGTGCTATGAAGAAGTCGTCTATTCCTGAAGTTGTTTCACAGTTGGGTTTAATTGGTAGAGTGATGGCAATAGTAAATTTGTGAGCTACTCGTTGTGATGACCAGCAAGCCTTCAGATAAACCTTTTCCAAAGTCATCAACATTTTCAAACAAACCTAGTTTGTTTAGACGATGCGGCAATAACTTAATCAATATTTGCTAATTTATTATATCCCCCCTCCAAGGAATCTGATTGTTCCTATGTTATTTTATATATTGCCGGTTTAGTTCAATGCAATATAATTGCACTGCGATCTTAAATTCCTTTCCTGGTTCACCTTTCCTTGCCAATGATCATGTTCATTCACTTATGCAGTAGTAGGCTTTTTTTTCTCCTTGGCATTTTGTTATGTGAACAAGGTCCACACTAGTCTTTCAACGTAAGTAAGAGTATCTTATGTTATATGTTTGCGAA
Coding sequences of Glyma.01g105500
>Glyma.01g105500.1 sequence-type=CDS polypeptide=Glyma.01g105500.1.p locus=Glyma.01g105500 ID=Glyma.01g105500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTCTGGACAGACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCCACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCCATTCCTGTCACTCAACTTGTTAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTTGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCGGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAAATTCAGGGTATTGACACCGGCCGAAATTGATGACTATTTGGCTGAAGTAGAATAA

>Glyma.01g105500.2 sequence-type=CDS polypeptide=Glyma.01g105500.2.p locus=Glyma.01g105500 ID=Glyma.01g105500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTCTGGACAGACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCCACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCCATTCCTGTCACTCAACTTGTTAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTTGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCGGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAAATTCAGGGTATTGACACCGGCCGAAATTGATGACTATTTGGCTGAAGTAGAATAA

>Glyma.01g105500.3 sequence-type=CDS polypeptide=Glyma.01g105500.3.p locus=Glyma.01g105500 ID=Glyma.01g105500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTCTGGACAGACGTCTTTGGGAATAAAAGCTGCAAATGGAGTTGTCATTGCCACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAAGAACCCATTCCTGTCACTCAACTTGTTAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTTGGAGTGTCACTGCTTGTTGCTGGATTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCGGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAAATTCAGGGTATTGACACCGGCCGAAATTGATGACTATTTGGCTGAAGTAGAATAA
Predicted protein sequences of Glyma.01g105500
>Glyma.01g105500.1.p sequence-type=predicted peptide transcript=Glyma.01g105500.1 locus=Glyma.01g105500 ID=Glyma.01g105500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTSILTLKEGFEGQISGKNIEIGIIGADKKFRVLTPAEIDDYLAEVE*

>Glyma.01g105500.2.p sequence-type=predicted peptide transcript=Glyma.01g105500.2 locus=Glyma.01g105500 ID=Glyma.01g105500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTSILTLKEGFEGQISGKNIEIGIIGADKKFRVLTPAEIDDYLAEVE*

>Glyma.01g105500.3.p sequence-type=predicted peptide transcript=Glyma.01g105500.3 locus=Glyma.01g105500 ID=Glyma.01g105500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTSILTLKEGFEGQISGKNIEIGIIGADKKFRVLTPAEIDDYLAEVE*






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