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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G18870.1 | AT | isochorismate synthase 2 | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0046654 | GO-bp | tetrahydrofolate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0008909 | GO-mf | isochorismate synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0046820 | GO-mf | 4-amino-4-deoxychorismate synthase activity | EnsemblGenomes | N/A | IEA |
| KOG1223 | KOG | Isochorismate synthase | JGI | N/A | IEA |
| PTHR11236 | Panther | AMINOBENZOATE/ANTHRANILATE SYNTHASE | JGI | N/A | IEA |
| PTHR11236:SF3 | Panther | ISOCHORISMATE SYNTHASE 1, CHLOROPLASTIC-RELATED | JGI | N/A | IEA |
| PF00425 | PFAM | chorismate binding enzyme | JGI | N/A | IEA |
| PWY-5791 | SoyCyc9 | 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) | Plant Metabolic Network | ISS | |
| PWY-5837 | SoyCyc9 | 1,4-dihydroxy-2-naphthoate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5863 | SoyCyc9 | superpathway of phylloquinol biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-55424 | SoyCyc9-rxn | isochorismate synthase | Plant Metabolic Network | ISS |
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Glyma.01g104100 not represented in the dataset |
Glyma.01g104100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g070600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g25690 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g104100.1 sequence-type=CDS polypeptide=Glyma.01g104100.1.p locus=Glyma.01g104100 ID=Glyma.01g104100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAATGGGCACGGTTCACAAGTGGCTCACTCATTTCACCGACACCAAAAAATGCAACAACATTCTCGTACCTCCTGCTTCCAAGGAACAGCAATCCATATACTTCCTCCAATACCATAGACCCGTGTATCAAAGATGCCACCTTTCAATGAATGGTTGCAGAGAGGGACAGCACCAATATTCAAGAACAAGGAACCCTGTTGGAACCATAGAAACCAAAACCTTGGCACCAGTTGCATCACCTGCAATGGCTATGTACAGCCTCAACATGGCCATTTCGGAGCTGGAATCGGAGGCTCCGTTCGGTACCTCTTCCGGCATTGTAAGGGTGCAGGTGCCAATTGAAGAGCAAGTTGAAGCCATTGATTGGCTTCTCTCACAGAACCACCTTCTCCTTCCTCGCTGCTTCTTCTTTGGAAGGAAACAGTACAGTCCCTGCTGCAATGGTGAAGAAAAGTTGGTCAGTGTTGCTGGGGTGGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCATTTTCATACTGGGATTGGATATCTATAAGGAGGTTTCTTTCTGAGAGATGCCCCTTAATCCGTGCCTATGGAGCTATCCGTTTCAATGCAAAAGCTAAGGTGTCATCAGAGTGGCTGGCTTTTGGTTCTTTCTACTTCATGATTCCTCAGGTTGAGTTCAATGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCTTGGGATAATAATCTTTCTTGGTCATGGGAAAATGCAATCAATGCCCTCCAAGAAACACTACGCAACGTTTCTTCTTCCATTGTGAAGTTTCCAAAACAAACTCCTCCAACATTAATATCAAGCAGCCATAACATTCCTAGTAAAGTAGACTGGGATCTTGCTGTTAATGGAGCTTTGCAGATGATAAAGCGAAATGATTCCTTACTAACTAAGGTTGTGCTAGCTCGTAGCACTAGAGTAGTGCCTACTGCTGATATTGATCCTCTTGCATGGTTATCGTGCTTAAAGGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAGCCACCAAATGCACCAGCATTTATTGGAAACACACCAGAGCAACTATTTCACAGAAAATGTCTCCACATTACTAGTGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGCATCACAAGCACTAGATTGCCAAATTGAACTTGACTTACTTACCAGTCCAAAGGATGACATTGAGTTTACTATAGTGAGAGACACCATAAGAAGAAAATTAGAGGCAGTATGTGAAAAAGTTGTAATCAAGCCAGAGAAAATGATAAGAAAACTCCCCAGGATTCAACATTTATATTCTCAATTATCTGGCAGGTTAAGAAGTGAAGAAGATGAGTTTGAAATTTTGTCATCTCTTCACCCGAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGAAACAGAAGTATTTGATCGAGGAATGTATGCTGGACCTGTTGGTTGGTTTGGTGGAGGAGAGAGTGAGTTTGCTGTTGGCATCAGGTCAGCATTGGTGGAAAAGGATCTTGGTGCTTTTATATATGCTGGGACAGGGATAGTGGAAGGCAGCAGTCCTTACCTGGAGTGGGATGAGCTAGAGCTCAAGACATCTCAGTTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGCAAATGA
>Glyma.01g104100.1.p sequence-type=predicted peptide transcript=Glyma.01g104100.1 locus=Glyma.01g104100 ID=Glyma.01g104100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAMGTVHKWLTHFTDTKKCNNILVPPASKEQQSIYFLQYHRPVYQRCHLSMNGCREGQHQYSRTRNPVGTIETKTLAPVASPAMAMYSLNMAISELESEAPFGTSSGIVRVQVPIEEQVEAIDWLLSQNHLLLPRCFFFGRKQYSPCCNGEEKLVSVAGVGSAVFFSQPHPFSYWDWISIRRFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFMIPQVEFNELEGGSMLTITIAWDNNLSWSWENAINALQETLRNVSSSIVKFPKQTPPTLISSSHNIPSKVDWDLAVNGALQMIKRNDSLLTKVVLARSTRVVPTADIDPLAWLSCLKVEGENAYQFLLQPPNAPAFIGNTPEQLFHRKCLHITSEALAGTRARGASQALDCQIELDLLTSPKDDIEFTIVRDTIRRKLEAVCEKVVIKPEKMIRKLPRIQHLYSQLSGRLRSEEDEFEILSSLHPSPAVCGFPTEEAQLLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKDLGAFIYAGTGIVEGSSPYLEWDELELKTSQFTKLLKLDLPRRQKVDCK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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