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Report for Sequence Feature Glyma.01g104100

Feature Type:gene_model
Chromosome:Gm01
Start:35076719
stop:35085254
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g104100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18870.1AT isochorismate synthase 2 JGI N/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0046654GO-bp tetrahydrofolate biosynthetic process EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0008909GO-mf isochorismate synthase activity EnsemblGenomesN/AIEA
GO:0046820GO-mf 4-amino-4-deoxychorismate synthase activity EnsemblGenomesN/AIEA
KOG1223 KOG Isochorismate synthase JGI N/AIEA
PTHR11236Panther AMINOBENZOATE/ANTHRANILATE SYNTHASE JGI N/AIEA
PTHR11236:SF3Panther ISOCHORISMATE SYNTHASE 1, CHLOROPLASTIC-RELATED JGI N/AIEA
PF00425PFAM chorismate binding enzyme JGI N/AIEA
PWY-5791SoyCyc9 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Plant Metabolic Network ISS
PWY-5837SoyCyc9 1,4-dihydroxy-2-naphthoate biosynthesis Plant Metabolic Network ISS
PWY-5863SoyCyc9 superpathway of phylloquinol biosynthesis Plant Metabolic Network ISS
GN7V-55424SoyCyc9-rxn isochorismate synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.01g104100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g104100
ParalogEvidenceComments
Glyma.03g070600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g104100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g25690 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g104100
>Glyma.01g104100.1 sequence-type=CDS polypeptide=Glyma.01g104100.1.p locus=Glyma.01g104100 ID=Glyma.01g104100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATGGGCACGGTTCACAAGTGGCTCACTCATTTCACCGACACCAAAAAATGCAACAACATTCTCGTACCTCCTGCTTCCAAGGAACAGCAATCCATATACTTCCTCCAATACCATAGACCCGTGTATCAAAGATGCCACCTTTCAATGAATGGTTGCAGAGAGGGACAGCACCAATATTCAAGAACAAGGAACCCTGTTGGAACCATAGAAACCAAAACCTTGGCACCAGTTGCATCACCTGCAATGGCTATGTACAGCCTCAACATGGCCATTTCGGAGCTGGAATCGGAGGCTCCGTTCGGTACCTCTTCCGGCATTGTAAGGGTGCAGGTGCCAATTGAAGAGCAAGTTGAAGCCATTGATTGGCTTCTCTCACAGAACCACCTTCTCCTTCCTCGCTGCTTCTTCTTTGGAAGGAAACAGTACAGTCCCTGCTGCAATGGTGAAGAAAAGTTGGTCAGTGTTGCTGGGGTGGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCATTTTCATACTGGGATTGGATATCTATAAGGAGGTTTCTTTCTGAGAGATGCCCCTTAATCCGTGCCTATGGAGCTATCCGTTTCAATGCAAAAGCTAAGGTGTCATCAGAGTGGCTGGCTTTTGGTTCTTTCTACTTCATGATTCCTCAGGTTGAGTTCAATGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCTTGGGATAATAATCTTTCTTGGTCATGGGAAAATGCAATCAATGCCCTCCAAGAAACACTACGCAACGTTTCTTCTTCCATTGTGAAGTTTCCAAAACAAACTCCTCCAACATTAATATCAAGCAGCCATAACATTCCTAGTAAAGTAGACTGGGATCTTGCTGTTAATGGAGCTTTGCAGATGATAAAGCGAAATGATTCCTTACTAACTAAGGTTGTGCTAGCTCGTAGCACTAGAGTAGTGCCTACTGCTGATATTGATCCTCTTGCATGGTTATCGTGCTTAAAGGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAGCCACCAAATGCACCAGCATTTATTGGAAACACACCAGAGCAACTATTTCACAGAAAATGTCTCCACATTACTAGTGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGCATCACAAGCACTAGATTGCCAAATTGAACTTGACTTACTTACCAGTCCAAAGGATGACATTGAGTTTACTATAGTGAGAGACACCATAAGAAGAAAATTAGAGGCAGTATGTGAAAAAGTTGTAATCAAGCCAGAGAAAATGATAAGAAAACTCCCCAGGATTCAACATTTATATTCTCAATTATCTGGCAGGTTAAGAAGTGAAGAAGATGAGTTTGAAATTTTGTCATCTCTTCACCCGAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGAAACAGAAGTATTTGATCGAGGAATGTATGCTGGACCTGTTGGTTGGTTTGGTGGAGGAGAGAGTGAGTTTGCTGTTGGCATCAGGTCAGCATTGGTGGAAAAGGATCTTGGTGCTTTTATATATGCTGGGACAGGGATAGTGGAAGGCAGCAGTCCTTACCTGGAGTGGGATGAGCTAGAGCTCAAGACATCTCAGTTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGCAAATGA
Predicted protein sequences of Glyma.01g104100
>Glyma.01g104100.1.p sequence-type=predicted peptide transcript=Glyma.01g104100.1 locus=Glyma.01g104100 ID=Glyma.01g104100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMGTVHKWLTHFTDTKKCNNILVPPASKEQQSIYFLQYHRPVYQRCHLSMNGCREGQHQYSRTRNPVGTIETKTLAPVASPAMAMYSLNMAISELESEAPFGTSSGIVRVQVPIEEQVEAIDWLLSQNHLLLPRCFFFGRKQYSPCCNGEEKLVSVAGVGSAVFFSQPHPFSYWDWISIRRFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFMIPQVEFNELEGGSMLTITIAWDNNLSWSWENAINALQETLRNVSSSIVKFPKQTPPTLISSSHNIPSKVDWDLAVNGALQMIKRNDSLLTKVVLARSTRVVPTADIDPLAWLSCLKVEGENAYQFLLQPPNAPAFIGNTPEQLFHRKCLHITSEALAGTRARGASQALDCQIELDLLTSPKDDIEFTIVRDTIRRKLEAVCEKVVIKPEKMIRKLPRIQHLYSQLSGRLRSEEDEFEILSSLHPSPAVCGFPTEEAQLLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKDLGAFIYAGTGIVEGSSPYLEWDELELKTSQFTKLLKLDLPRRQKVDCK*






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