SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37680.1 | AT | JGI | N/A | IEA | |
| GO:0006623 | GO-bp | protein targeting to vacuole | EnsemblGenomes | N/A | IEA |
| GO:0007039 | GO-bp | protein catabolic process in the vacuole | EnsemblGenomes | N/A | IEA |
| GO:0043161 | GO-bp | proteasome-mediated ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0045721 | GO-bp | negative regulation of gluconeogenesis | EnsemblGenomes | N/A | IEA |
| GO:0005773 | GO-cc | vacuole | EnsemblGenomes | N/A | IEA |
| GO:0019898 | GO-cc | extrinsic component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0031410 | GO-cc | cytoplasmic vesicle | EnsemblGenomes | N/A | IEA |
| GO:0034657 | GO-cc | GID complex | EnsemblGenomes | N/A | IEA |
| PTHR14534 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR14534:SF5 | Panther | JGI | N/A | IEA | |
| PF09783 | PFAM | Vacuolar import and degradation protein | JGI | N/A | IEA |
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Glyma.01g100200 not represented in the dataset |
Glyma.01g100200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g068800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g24570 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g100200.1 sequence-type=CDS polypeptide=Glyma.01g100200.1.p locus=Glyma.01g100200 ID=Glyma.01g100200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTGTATTGTTTTTCTCGAATTGCCACACTGACCCAGCAATTTCTGCTGCATCTTCTTCACATCACAATCACAGAAACATGCCCGTGAGAGTATTGGAGAACACCGCAGCACCTTCTTCTCAGGTTTCAGGTGCCAATTCGGGAAGGAGTTCGTGCCAATCTTGTAGTCTTCTAGGCGTTGGGCAGGCCTTTTCTGGCACCCAGAATGTCTCAAGTGTACAAAAGGATGAAGCATGGAGAGTAAATGTCCGTATACAAGGATGTGACCTTGAGCATGGGTATTTGTGTGGCACCATGGAAGCTCTTAATGTTCCTATGGCAGACACACCAGTAGTAACGTTCTGGGAAGGGGAGATAGTTGATACAAAGAACTATACTTTCTTCACCGGTAAATGGGAGGCATCTCCAGAGGATGATATAAGGCACTGGTCTAAATTTCCATCTTTTTCTCCCTTATTGGGCCAAGTGGAGGCTGATGGTGGCAAGTCTTTGGACCTGAGCAACTATCCTTACATATTCATGAGGTGGAAGGAGCAATACTTCGTGAATGTTGGAACAGACTGTGGATTAACCATAGCCGGATTTTACTACATTTGTTTCTCTTGCAGCAATGGCTCTATCAGTGGATTCTATTATGATCCCAATAGCAGCCCTTACCAGAAGCTTGAGTTGAAATCCACCAATGATGGAAGATCAGGTTTCAGTTTTTCATCATATGAGTTACAATAG
>Glyma.01g100200.1.p sequence-type=predicted peptide transcript=Glyma.01g100200.1 locus=Glyma.01g100200 ID=Glyma.01g100200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVLFFSNCHTDPAISAASSSHHNHRNMPVRVLENTAAPSSQVSGANSGRSSCQSCSLLGVGQAFSGTQNVSSVQKDEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDTKNYTFFTGKWEASPEDDIRHWSKFPSFSPLLGQVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYICFSCSNGSISGFYYDPNSSPYQKLELKSTNDGRSGFSFSSYELQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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