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Report for Sequence Feature Glyma.01g100000

Feature Type:gene_model
Chromosome:Gm01
Start:33325089
stop:33327247
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g100000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02110.1AT CYCLIN D7;1 JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
KOG0656 KOG G1/S-specific cyclin D JGI N/AIEA
PTHR10177Panther CYCLINE JGI N/AIEA
PTHR10177:SF76Panther JGI N/AIEA
PF00134PFAM Cyclin, N-terminal domain JGI N/AIEA

Expression Patterns of Glyma.01g100000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g100000 not represented in the dataset
Glyma.01g100000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g100000
ParalogEvidenceComments
Glyma.03g069200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g100000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g24543 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g100000
>Glyma.01g100000.1 sequence-type=CDS polypeptide=Glyma.01g100000.1.p locus=Glyma.01g100000 ID=Glyma.01g100000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAATTTGCTATGTGATGAGGTGTGGCTTTCAAAGTCTGCAAATACTTTTGAAGAAGTTATTAGTGACCCTGTTGCACTAAAGAGTTATGAAAATGAAGAGTTTGAAGAGGCTTTTGCAGTGTGTCTAGAGAAGGAGGTCTTGTGCTTGCCCGAACCTGACTATACAAAGTACTTACACTCCAACAATTTGATTTTTCCTAGGTGTAGAGTTATTCAATGGTTTATCAAGTGTAGAAGACGCTTTAATCTTTCTTTTGGGACAGTTTTCTTGGCTTTTAATTATCTTGATCGCTTTGTATCCATTTGTCAATGCAATGATTGGGAATACTGGATGCTTGAATTGCTTTCTATTGCATGCTTATCAATTGCCATAAAGTTCAATGAGATATCAGGACTTTCGTTGCATGAAATTCAGGTGGAGGGCTTGGACTATTCATTCCAATCAAACGTAATTTTGAAAATGGAGCTGATCCTATTGAAGGCGTTGGGGTGGCGCCTTAACTCTATGACAAGTTTTTCTTTTGCAGAAATGCTAGGTTTTGATTTCTTGGAACCTCATCATCATGTGAAGCTTATTTCACGAGTCACTGATCTCCTTGTCCAAGCTACTTTAGATCAGAAAATGATGGAATTCAGGCCAAGTGTTGTTGGTATGTCTGCATTGTGGTGCACTCTAGACCAGTTATTTCCACCAACATCAGACACTTACATTGCTTATATTATGAGTATCTTAAACCAAAGCCAGAAGGATGATATCATCAAGTGCCACAAGTTGATGGAAACACAGACTTCAATGTGTGTTGAAAATCACCATTATTACTGCCCTTTAAGCCCAACAACAGTACTATTGAACACGCATGACTAG
Predicted protein sequences of Glyma.01g100000
>Glyma.01g100000.1.p sequence-type=predicted peptide transcript=Glyma.01g100000.1 locus=Glyma.01g100000 ID=Glyma.01g100000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDNLLCDEVWLSKSANTFEEVISDPVALKSYENEEFEEAFAVCLEKEVLCLPEPDYTKYLHSNNLIFPRCRVIQWFIKCRRRFNLSFGTVFLAFNYLDRFVSICQCNDWEYWMLELLSIACLSIAIKFNEISGLSLHEIQVEGLDYSFQSNVILKMELILLKALGWRLNSMTSFSFAEMLGFDFLEPHHHVKLISRVTDLLVQATLDQKMMEFRPSVVGMSALWCTLDQLFPPTSDTYIAYIMSILNQSQKDDIIKCHKLMETQTSMCVENHHYYCPLSPTTVLLNTHD*






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