SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.01g087000): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.01g087000): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.01g087000

Feature Type:gene_model
Chromosome:Gm01
Start:26205319
stop:26210521
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g087000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13270.1AT methionine aminopeptidase 1B JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0009987GO-bp cellular process JGI N/AIEA
GO:0070084GO-bp protein initiator methionine removal EnsemblGenomesN/AIEA
GO:0004177GO-mf aminopeptidase activity EnsemblGenomesN/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0008235GO-mf metalloexopeptidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0070006GO-mf metalloaminopeptidase activity EnsemblGenomesN/AIEA
PTHR10804Panther PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) JGI N/AIEA
PTHR10804:SF50Panther JGI N/AIEA
PF00557PFAM Metallopeptidase family M24 JGI N/AIEA

Expression Patterns of Glyma.01g087000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g087000 not represented in the dataset
Glyma.01g087000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01g087000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g22170 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g087000
>Glyma.01g087000.1 sequence-type=CDS polypeptide=Glyma.01g087000.1.p locus=Glyma.01g087000 ID=Glyma.01g087000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAATTGATGCCGGTGCTTATCCCTCACCCCTTGGCTATGGTGGATTTCCGAAAAGTGTGTGCACATCTGTTAATGAGTGCATGTGCCATGGAATACCTGATTCTCGGCAGTTACAGAATGGTGATATTATTAACATTGATGTGACAGTCTACCTGGATGGATATCATGGAGACACATCAAAGACATTTTTTTGTGGGGAAGTCGGTGATGAACTCAAAAATCTTGTTAAGGTAACTGAAGAGTGCCTGGAGAAGGGAATAGCTGCGTGCAAGGACGGTGCTCTCTTTAGGAAAATTGGAAAGAGAATCAGTGAGCATGCTGAAAAGTATGGCTATGGTGTAGTGGAGCGTTTTGTTGGGCATGGTGTGGGAACAGTGTTCCATTCTGAACCAATTATTATGCACAATCGCAATGAGAAGGCAGGTCGCATGATTGAAGGTCAAACATTTACAATTGAGCCGATTCTTTCGATGGGAAGCATTGATTCCATTACATGGCCTGACAACTGGACAACAATAACAGCTGATGGTAGTCCGGCTGCACAGTTTGAGCATACCATTTTGATAACTAAGACTGGAGCCGAAATTTTGACTAAATGTTGA
Predicted protein sequences of Glyma.01g087000
>Glyma.01g087000.1.p sequence-type=predicted peptide transcript=Glyma.01g087000.1 locus=Glyma.01g087000 ID=Glyma.01g087000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIDAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQNGDIINIDVTVYLDGYHGDTSKTFFCGEVGDELKNLVKVTEECLEKGIAACKDGALFRKIGKRISEHAEKYGYGVVERFVGHGVGTVFHSEPIIMHNRNEKAGRMIEGQTFTIEPILSMGSIDSITWPDNWTTITADGSPAAQFEHTILITKTGAEILTKC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo