Glyma.01g082200

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.01g082200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.01g082200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.01g082200

Feature Type:	gene_model
Chromosome:	Gm01
Start:	23956083
stop:	23964709
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g082200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06350.1	AT	dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative	JGI	N/A	IEA
GO:0009423	GO-bp	chorismate biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0019632	GO-bp	shikimate metabolic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0009570	GO-cc	chloroplast stroma	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003855	GO-mf	3-dehydroquinate dehydratase activity	EnsemblGenomes	N/A	IEA
GO:0003855	GO-mf	3-dehydroquinate dehydratase activity	JGI	N/A	IEA
GO:0004764	GO-mf	shikimate 3-dehydrogenase (NADP+) activity	EnsemblGenomes	N/A	IEA
GO:0004764	GO-mf	shikimate 3-dehydrogenase (NADP+) activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
KOG0692	KOG	Pentafunctional AROM protein	JGI	N/A	IEA
PTHR21089	Panther	SHIKIMATE DEHYDROGENASE	JGI	N/A	IEA
PF01487	PFAM	Type I 3-dehydroquinase	JGI	N/A	IEA
PF01488	PFAM	Shikimate / quinate 5-dehydrogenase	JGI	N/A	IEA
PF08501	PFAM	Shikimate dehydrogenase substrate binding domain	JGI	N/A	IEA
ARO-PWY	SoyCyc9	chorismate biosynthesis I	Plant Metabolic Network		ISS
PWY-6163	SoyCyc9	chorismate biosynthesis from 3-dehydroquinate	Plant Metabolic Network		ISS
PWY-6707	SoyCyc9	gallate biosynthesis	Plant Metabolic Network		ISS
GN7V-63374	SoyCyc9-rxn	shikimate dehydrogenase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.01g082200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g082200 not represented in the dataset	Glyma.01g082200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.01g082200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g20760	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g082200

Limit To All Plant Sequences

>Glyma.01g082200.2 sequence-type=transcript locus=Glyma.01g082200 ID=Glyma.01g082200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGCGGTGAAGAGAAAGGGTGGTGGTTAATGGTTATAGCTGCGGCGCTCAACTTGCAGCGGTCACTGCGTTGGTGCTCGTAAGGGCAGCGGAAGAGATGCAGCCAGCGAGGGTGGTCTTCTGTGATCTTGATATTCTCTGGTTATTgaaaaggaaaaaaagaataaaaagaaaaagaaaaaaaTCCTGGTCATTGACTTAAAAGGTCATACATCTAACGGTGTTGAATAACTTTCCCATGGTGGGAGACCTAATCCACTCTCCCACAATAGCCTGCGCCCACCAACCAACATACTTCAACAACTACTCTCTCTCTCTCTCCTTCTCAGCATCAAACACACCCCTTCCCAAAACTCATTTCTCATCTCAATCAATCCAATGGACTCTCCCAACGCTTTGTCTACCGCTCCGGCAGCGGGTAGTAGGAAGAACGCGACGCTAATTTGCGTCCCAATAATGGGAGAATCAGTTGAAAAGATGGAGATTGACGTGGACAAAGCGAAAGCCGGAGGCGCGGACCTTGTTGAAATTCGATTGGATTCTTTGAAAACCTTTGACCCCTATCGAGATCTCAACGCTTTCATTCAACACCGTTCTTTACCCTTGTTGTTCACTTACAGGCCCAAATGGGAGGGTGGTATGTATGATGGTGATGAAAATAAACGGCTGGATGCACTTCGGTTAGCCATGGAGTTGGGAGCTGATTACATTGACATTGAACTTCAGGTAGCACATGAGTTCTATGACTCTATACGTGGGAAGACATTCAATAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCTTACTCCTTCAATTGAGGATCTTGGTAACCTTGTAGCAAGAATACAAGCAACGGGAGCAGACATTGTGAAGATTGCAACAACTGCCTTGGACATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTTCCATTTATTGGACTTGTTATGGGTGATAGGGGGTTGATTTCTCGTATACTTTCTGCAAAATTTGGTGGATATCTCACTTTTGGTACCCTTGAGTCAGGAGTTGTTTCAGCTCCTGGTCAACCTACTCTTAAGGATCTATTGTATCTATACAATTTAAGACAACTGGCTCCTGATACAAAAGTATTTGGGATTATTGGAAAGCCTGTCGGTCACAGTAAATCACCCATATTATTCAATGAAGTCTTCAAGTCAATTGGTTTGAATGGTGTTTATCTATTTTTATTGGTGGATGACCTTGCCAATTTTCTCAGGACTTACTCTTCTACAGATTTTGTGGGATTCAGTGTTACCATTCCTCACAAGGAGACAGCACTTAAGTGTTGTGATGAGGTTGATCCAGTGGCTAAGTCAATAGGAGCTGTGAATTGCATTGTAAGAAGACCAACTGACGGGAAATTGATTGGGTATAACACTGATTATGTTGGTGCTATTACTGCAATTGAGAATGGGTTACGAGGTAAACATAATGGTAGTAGCACAACTATTTCTCCATTAGCTGGTAAGCTGTTTGTTGTTATTGGGGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGTGCAAAAGCAAAAGGAGCTAGGGTTGTGATTGCAAACCGTACCTATGACCATGCCAGAAAACTTGCTTATGCAATTGGAGGAGATGCTTTAGCCCTTGCTGATTTAGATAATTACCATCCGGAGGATGGTATGATTCTTGCAAACACAACATCAATTGGAATGCAACCTAAAGTTGATGAGACGCCTGTTTCTAAGCACGCTTTGAAATATTACTCCCTAGTTTTTGATGCTGTCTACACGCCCAAGATTACTAGACTCTTGAAAGAAGCAGAAGAATCAGGAGCCACTATTGTAACAGGATTGGAGATGTTTATGGGGCAAGCATATGGACAATATGAGAATTTCACCGGATTACCAGCACCAAAGGAGCTCTTCAGAAAAATTATGGAAAACTATTGAAGAGTGATCGGTTATCTTTGCAACACAATCAAAGAATCTAATGGCGAGGTACTTTAAAGTGTTTAGGATGTGAATGAGGAGGTATCCTCCCCGTTCTACTTCCAATTTTTCAAAGTCTTGTTAATTGAAATCAACAAATGATTTTGTATCTCAATTAGAGTGTATTTGGATAGAGAATTTTAACTGAGGAGACTAATTTATCAGAGAATTTAAATTTTTTTTAATTTAAAATTTATTATTTGGATGTT

Coding sequences of Glyma.01g082200

Limit To All Plant Sequences

>Glyma.01g082200.1 sequence-type=CDS polypeptide=Glyma.01g082200.1.p locus=Glyma.01g082200 ID=Glyma.01g082200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCCAGCGAGGGTGGTCTTCTGTGATCTTGATATTCTCTGCATCAAACACACCCCTTCCCAAAACTCATTTCTCATCTCAATCAATCCAATGGACTCTCCCAACGCTTTGTCTACCGCTCCGGCAGCGGGTAGTAGGAAGAACGCGACGCTAATTTGCGTCCCAATAATGGGAGAATCAGTTGAAAAGATGGAGATTGACGTGGACAAAGCGAAAGCCGGAGGCGCGGACCTTGTTGAAATTCGATTGGATTCTTTGAAAACCTTTGACCCCTATCGAGATCTCAACGCTTTCATTCAACACCGTTCTTTACCCTTGTTGTTCACTTACAGGCCCAAATGGGAGGGTGGTATGTATGATGGTGATGAAAATAAACGGCTGGATGCACTTCGGTTAGCCATGGAGTTGGGAGCTGATTACATTGACATTGAACTTCAGGTAGCACATGAGTTCTATGACTCTATACGTGGGAAGACATTCAATAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCTTACTCCTTCAATTGAGGATCTTGGTAACCTTGTAGCAAGAATACAAGCAACGGGAGCAGACATTGTGAAGATTGCAACAACTGCCTTGGACATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTTCCATTTATTGGACTTGTTATGGGTGATAGGGGGTTGATTTCTCGTATACTTTCTGCAAAATTTGGTGGATATCTCACTTTTGGTACCCTTGAGTCAGGAGTTGTTTCAGCTCCTGGTCAACCTACTCTTAAGGATCTATTGTATCTATACAATTTAAGACAACTGGCTCCTGATACAAAAGTATTTGGGATTATTGGAAAGCCTGTCGGTCACAGTAAATCACCCATATTATTCAATGAAGTCTTCAAGTCAATTGGTTTGAATGGTGTTTATCTATTTTTATTGGTGGATGACCTTGCCAATTTTCTCAGGACTTACTCTTCTACAGATTTTGTGGGATTCAGTGTTACCATTCCTCACAAGGAGACAGCACTTAAGTGTTGTGATGAGGTTGATCCAGTGGCTAAGTCAATAGGAGCTGTGAATTGCATTGTAAGAAGACCAACTGACGGGAAATTGATTGGGTATAACACTGATTATGTTGGTGCTATTACTGCAATTGAGAATGGGTTACGAGGTAAACATAATGGTAGTAGCACAACTATTTCTCCATTAGCTGGTAAGCTGTTTGTTGTTATTGGGGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGTGCAAAAGCAAAAGGAGCTAGGGTTGTGATTGCAAACCGTACCTATGACCATGCCAGAAAACTTGCTTATGCAATTGGAGGAGATGCTTTAGCCCTTGCTGATTTAGATAATTACCATCCGGAGGATGGTATGATTCTTGCAAACACAACATCAATTGGAATGCAACCTAAAGTTGATGAGACGCCTGTTTCTAAGCACGCTTTGAAATATTACTCCCTAGTTTTTGATGCTGTCTACACGCCCAAGATTACTAGACTCTTGAAAGAAGCAGAAGAATCAGGAGCCACTATTGTAACAGGATTGGAGATGTTTATGGGGCAAGCATATGGACAATATGAGAATTTCACCGGATTACCAGCACCAAAGGAGCTCTTCAGAAAAATTATGGAAAACTATTGA

>Glyma.01g082200.2 sequence-type=CDS polypeptide=Glyma.01g082200.2.p locus=Glyma.01g082200 ID=Glyma.01g082200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACTCTCCCAACGCTTTGTCTACCGCTCCGGCAGCGGGTAGTAGGAAGAACGCGACGCTAATTTGCGTCCCAATAATGGGAGAATCAGTTGAAAAGATGGAGATTGACGTGGACAAAGCGAAAGCCGGAGGCGCGGACCTTGTTGAAATTCGATTGGATTCTTTGAAAACCTTTGACCCCTATCGAGATCTCAACGCTTTCATTCAACACCGTTCTTTACCCTTGTTGTTCACTTACAGGCCCAAATGGGAGGGTGGTATGTATGATGGTGATGAAAATAAACGGCTGGATGCACTTCGGTTAGCCATGGAGTTGGGAGCTGATTACATTGACATTGAACTTCAGGTAGCACATGAGTTCTATGACTCTATACGTGGGAAGACATTCAATAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCTTACTCCTTCAATTGAGGATCTTGGTAACCTTGTAGCAAGAATACAAGCAACGGGAGCAGACATTGTGAAGATTGCAACAACTGCCTTGGACATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTTCCATTTATTGGACTTGTTATGGGTGATAGGGGGTTGATTTCTCGTATACTTTCTGCAAAATTTGGTGGATATCTCACTTTTGGTACCCTTGAGTCAGGAGTTGTTTCAGCTCCTGGTCAACCTACTCTTAAGGATCTATTGTATCTATACAATTTAAGACAACTGGCTCCTGATACAAAAGTATTTGGGATTATTGGAAAGCCTGTCGGTCACAGTAAATCACCCATATTATTCAATGAAGTCTTCAAGTCAATTGGTTTGAATGGTGTTTATCTATTTTTATTGGTGGATGACCTTGCCAATTTTCTCAGGACTTACTCTTCTACAGATTTTGTGGGATTCAGTGTTACCATTCCTCACAAGGAGACAGCACTTAAGTGTTGTGATGAGGTTGATCCAGTGGCTAAGTCAATAGGAGCTGTGAATTGCATTGTAAGAAGACCAACTGACGGGAAATTGATTGGGTATAACACTGATTATGTTGGTGCTATTACTGCAATTGAGAATGGGTTACGAGGTAAACATAATGGTAGTAGCACAACTATTTCTCCATTAGCTGGTAAGCTGTTTGTTGTTATTGGGGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGTGCAAAAGCAAAAGGAGCTAGGGTTGTGATTGCAAACCGTACCTATGACCATGCCAGAAAACTTGCTTATGCAATTGGAGGAGATGCTTTAGCCCTTGCTGATTTAGATAATTACCATCCGGAGGATGGTATGATTCTTGCAAACACAACATCAATTGGAATGCAACCTAAAGTTGATGAGACGCCTGTTTCTAAGCACGCTTTGAAATATTACTCCCTAGTTTTTGATGCTGTCTACACGCCCAAGATTACTAGACTCTTGAAAGAAGCAGAAGAATCAGGAGCCACTATTGTAACAGGATTGGAGATGTTTATGGGGCAAGCATATGGACAATATGAGAATTTCACCGGATTACCAGCACCAAAGGAGCTCTTCAGAAAAATTATGGAAAACTATTGA

Predicted protein sequences of Glyma.01g082200

Limit To All Plant Sequences

>Glyma.01g082200.1.p sequence-type=predicted peptide transcript=Glyma.01g082200.1 locus=Glyma.01g082200 ID=Glyma.01g082200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQPARVVFCDLDILCIKHTPSQNSFLISINPMDSPNALSTAPAAGSRKNATLICVPIMGESVEKMEIDVDKAKAGGADLVEIRLDSLKTFDPYRDLNAFIQHRSLPLLFTYRPKWEGGMYDGDENKRLDALRLAMELGADYIDIELQVAHEFYDSIRGKTFNKTKVIVSSHNYQLTPSIEDLGNLVARIQATGADIVKIATTALDITDVARMFQIMVHSQVPFIGLVMGDRGLISRILSAKFGGYLTFGTLESGVVSAPGQPTLKDLLYLYNLRQLAPDTKVFGIIGKPVGHSKSPILFNEVFKSIGLNGVYLFLLVDDLANFLRTYSSTDFVGFSVTIPHKETALKCCDEVDPVAKSIGAVNCIVRRPTDGKLIGYNTDYVGAITAIENGLRGKHNGSSTTISPLAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDHARKLAYAIGGDALALADLDNYHPEDGMILANTTSIGMQPKVDETPVSKHALKYYSLVFDAVYTPKITRLLKEAEESGATIVTGLEMFMGQAYGQYENFTGLPAPKELFRKIMENY*

>Glyma.01g082200.2.p sequence-type=predicted peptide transcript=Glyma.01g082200.2 locus=Glyma.01g082200 ID=Glyma.01g082200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSPNALSTAPAAGSRKNATLICVPIMGESVEKMEIDVDKAKAGGADLVEIRLDSLKTFDPYRDLNAFIQHRSLPLLFTYRPKWEGGMYDGDENKRLDALRLAMELGADYIDIELQVAHEFYDSIRGKTFNKTKVIVSSHNYQLTPSIEDLGNLVARIQATGADIVKIATTALDITDVARMFQIMVHSQVPFIGLVMGDRGLISRILSAKFGGYLTFGTLESGVVSAPGQPTLKDLLYLYNLRQLAPDTKVFGIIGKPVGHSKSPILFNEVFKSIGLNGVYLFLLVDDLANFLRTYSSTDFVGFSVTIPHKETALKCCDEVDPVAKSIGAVNCIVRRPTDGKLIGYNTDYVGAITAIENGLRGKHNGSSTTISPLAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDHARKLAYAIGGDALALADLDNYHPEDGMILANTTSIGMQPKVDETPVSKHALKYYSLVFDAVYTPKITRLLKEAEESGATIVTGLEMFMGQAYGQYENFTGLPAPKELFRKIMENY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain