Glyma.01g081500

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.01g081500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.01g081500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.01g081500

Feature Type:	gene_model
Chromosome:	Gm01
Start:	23600436
stop:	23609894
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g081500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02540.3	AT	Rad23 UV excision repair protein family	JGI	N/A	IEA
GO:0006289	GO-bp	nucleotide-excision repair	EnsemblGenomes	N/A	IEA
GO:0006289	GO-bp	nucleotide-excision repair	JGI	N/A	IEA
GO:0043161	GO-bp	proteasome-mediated ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0043161	GO-bp	proteasome-mediated ubiquitin-dependent protein catabolic process	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003684	GO-mf	damaged DNA binding	EnsemblGenomes	N/A	IEA
GO:0003684	GO-mf	damaged DNA binding	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG0011	KOG	Nucleotide excision repair factor NEF2, RAD23 component	JGI	N/A	IEA
PTHR10621	Panther	UV EXCISION REPAIR PROTEIN RAD23	JGI	N/A	IEA
PF00240	PFAM	Ubiquitin family	JGI	N/A	IEA
PF00627	PFAM	UBA/TS-N domain	JGI	N/A	IEA
PF09280	PFAM	XPC-binding domain	JGI	N/A	IEA

Expression Patterns of Glyma.01g081500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g081500 not represented in the dataset	Glyma.01g081500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.01g081500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g20670	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.01g081500

Limit To All Plant Sequences

>Glyma.01g081500.1 sequence-type=CDS polypeptide=Glyma.01g081500.1.p locus=Glyma.01g081500 ID=Glyma.01g081500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGTTTTCGTGAAGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACGCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAGGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGTTATCAAAGACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAGTAACTTGGAGGGAACCATTCAGCAAATCCTTGACATGGGTGGAGGAAGCTGGGACAGGGATACTGTTGTTCGTGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTCCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCCAATCCTTTAGATCTCTTTCCCCAGGGCCTTCCAAATGTTGGGTCTGGTGCTGCTGGTGCTGGCTCTTTAGACTTTCTTCGCAACAGTCAACAGTTCCAAGCCTTACGCGCTATGGTACAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGCGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCCGTTGAAGGGGGTGAGGGAAATATACTGGGACAGCTAGCTAGTGCCATGCCGCAAGCAGTGACAGTCACCCCTGAGGAACGGCAAGCAATTGAACGTCTCGAAGCAATGGGATTTGATCGTGCAACTGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTTGATGAATAA

Predicted protein sequences of Glyma.01g081500

Limit To All Plant Sequences

>Glyma.01g081500.1.p sequence-type=predicted peptide transcript=Glyma.01g081500.1 locus=Glyma.01g081500 ID=Glyma.01g081500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSVKASATPTSTSVSAAPQAPASTGATPTPVTAPAAPASAAAPAPISSGSAVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain