SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.01g077000

Feature Type:gene_model
Chromosome:Gm01
Start:18542663
stop:18544908
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g077000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65680.1AT expansin B2 JGI N/AIEA
GO:0019953GO-bp sexual reproduction EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
PF01357PFAM Pollen allergen JGI N/AIEA
PF03330PFAM Rare lipoprotein A (RlpA)-like double-psi beta-barrel JGI N/AIEA

Proteins Associated with Glyma.01g077000
LocusGene SymbolProtein Name
CIM1 cytokinin induced message

Expression Patterns of Glyma.01g077000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01g077000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g16140 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g077000
>Glyma.01g077000.1 sequence-type=CDS polypeptide=Glyma.01g077000.1.p locus=Glyma.01g077000 ID=Glyma.01g077000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTACACTTCAACGTGCATTATCTGAACTACTCACCCTAATAGCTATTCTCTCAATATTCCTAGTGATCCCTTCCTTTTGTTTCAACCCCAAAAAGCTTTATAATGCTTCATATTATTCTCCATCTAGTTCAGATTGGTCACCTGCAGTGGCCACTTGGTATGGACCTGCCAATGGAGATGGAAGTGAAGGTGGAGCTTGTGGATATGGTAACGCTGTTGGGCAACCTCCATTTTCTTCTTTAATATCCGCGGGAAGCCCTCTTATATATGACTCTGGCAAAGGATGTGGTTCTTGTTATGAGGTGAAATGCACAGGGAATTCTGCATGCTCAGGCAACCCCGTGAAAGTAGTCATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGATCTGAGTGGCAATGCTTTTGGAGCAATGGCAATTTCGGGCCAAGATGAGAATCTACGCAATGCAGGAAAAATAAACATTCAGCACAGAAGAATTGAATGCAACTATCCCGGTAGGTCAATAGCTTTCCACGTGGATTCTGGCTCAAACCAAGAATATTTTGCTACCTTGGTTGAATATGAGGATGGGGATGGTGACCTTGCCAAGGTTGAACTCAAGGAAGCACTTGATTCAGGGTCATGGGATTCCATGCAACAATCATGGGGTGCAGTTTGGAAATTTGACAAGGGCTCACCACTGAGAGCACCATTCTCTATCAAGCTAACCACACTTGAGTCTGGCCAGACCATTGTGGCCAACAATGTGATCCCTGCAGGGTGGACTCCTGGTCAGACTTACAGATCGATTGTGAATTTTGCAACCTAA
Predicted protein sequences of Glyma.01g077000
>Glyma.01g077000.1.p sequence-type=predicted peptide transcript=Glyma.01g077000.1 locus=Glyma.01g077000 ID=Glyma.01g077000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALTLQRALSELLTLIAILSIFLVIPSFCFNPKKLYNASYYSPSSSDWSPAVATWYGPANGDGSEGGACGYGNAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSACSGNPVKVVITDECAGCGSDAQYHFDLSGNAFGAMAISGQDENLRNAGKINIQHRRIECNYPGRSIAFHVDSGSNQEYFATLVEYEDGDGDLAKVELKEALDSGSWDSMQQSWGAVWKFDKGSPLRAPFSIKLTTLESGQTIVANNVIPAGWTPGQTYRSIVNFAT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo